View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125R-Insertion-1 (Length: 834)
Name: NF3125R-Insertion-1
Description: NF3125R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125R-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 8 - 486
Target Start/End: Original strand, 3810440 - 3810919
Alignment:
| Q |
8 |
agtcaattgatgatcttattcatgcagttcagaaagcatttgatgaatattcatgtgtacaatccgataaaaaattttatactctacaaacatgcatggt |
107 |
Q |
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| T |
3810440 |
agtcaattgatgatcttattcatgcagttcagaaagcattcgatgaatattcatgtgtacaatccgataaaaaaatttatactctacaaacatgcatggt |
3810539 |
T |
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| Q |
108 |
tgaaataatgaagaataagggatcaaacaggtacaaaactcctcacaagaagaaagatatgctatataaccaagatgggatacctactcaattaagttgt |
207 |
Q |
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| T |
3810540 |
tgaaataatgaagaataagggatcaaacaggtacaaaactcctcacaagaagaaagatatgctatataaccaagatgggatacctactcaattaagttgt |
3810639 |
T |
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| Q |
208 |
gattctgagctgattcaagaagtcacagattatcttcaaagttttaatgcatcattagcatgattacaatgagaatgcaatgcaagtgttttgtgcttgc |
307 |
Q |
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| T |
3810640 |
gattctgaactgattcaagaagtcacatattatcttcaaagttttaatgcatcattagcatgattacaatgagaatgcaatgcaagtgttttgtgcttgc |
3810739 |
T |
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| Q |
308 |
tttgttcacc-nnnnnnnnncctagtttcgaactttatagagctagtttgtcatttttaagggattttgttgttcttaggatttaatccttgctactttc |
406 |
Q |
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| T |
3810740 |
tttgttcaccttttttttttcctagtttcgaactttatagagctagtttgtcatttttaagggattttgttgttcttaggatttaatccttgctactttc |
3810839 |
T |
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| Q |
407 |
attattaatgatattgttttcaccttnnnnnnnttgcagaagtgttactccaatttgatttatgcgcttcaagaatcaag |
486 |
Q |
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| T |
3810840 |
attattaatgatattgttttcaccttaaaaaaattgcagaagtgttactccaatttgatttatacgcttcaagaatcaag |
3810919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 549 - 737
Target Start/End: Original strand, 3810982 - 3811170
Alignment:
| Q |
549 |
gaatgtggaacataacaggtacccttaaaaagaaaataaagacaataaattaaacgattaaccacaaattcattactcttaaaagggtttgttatcggtt |
648 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810982 |
gaatgtggaacataacaggtacccttaaaaagaaaataaaaacaataaattaaacgattaaccacaaattcattactcttaaaagggtttgttatcggtt |
3811081 |
T |
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| Q |
649 |
gaagttatcaatatccatgaaaattacattaatgagctatattccattgaaacacatcttcagcacatgcataacctcacgcttcacag |
737 |
Q |
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| T |
3811082 |
gaagttatcaatatccatgaaaattacattaatgagctatattccattgaaacacatcttcagcacatgcataacctcacgcttcacag |
3811170 |
T |
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