View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125R-Insertion-2 (Length: 756)
Name: NF3125R-Insertion-2
Description: NF3125R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125R-Insertion-2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 656; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 76 - 756
Target Start/End: Original strand, 49592560 - 49593240
Alignment:
| Q |
76 |
ataagggctattgaagtgagnnnnnnntcgattaccttaggataattattgaagttggtcttaagaacatgttcaacattaacaggatcagcaatgtatg |
175 |
Q |
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| T |
49592560 |
ataagggctattgaagtgagaaaaaaatcgattaccttaggataattattgaagttggtcttaagaacatgttcaacattaacaggatcagcaatgtatg |
49592659 |
T |
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| Q |
176 |
tataagttgtgaacggcatggggaccacaacagttttggacatggaaaaatattggacaagccaatcatgcattctatcatagttcatcaattgttcaat |
275 |
Q |
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| T |
49592660 |
tataagttgtgaacggcatggggaccacaacagttttggacatggaaaaatattggacaagccaatcatgcattctatcatagttcatcaattgttcaat |
49592759 |
T |
|
| Q |
276 |
tgcagctccaagaaatggccaagttttgggtccttttttgttcctttgactccatctatgtaagaatatccatgaaacaatcatgcatatcaatatcact |
375 |
Q |
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| T |
49592760 |
tgcagctccaagaaatggccaagttttgggtccttttttgttcctttgactccatctatgtaagaatatccatgaaacaatcatgcatatcaatatcact |
49592859 |
T |
|
| Q |
376 |
aaccctcccatgttgcatctattcttaaaagggacattattgtgagattcatgtcttgtctcacttttaagacatgtaaaattagctccatatggattat |
475 |
Q |
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| T |
49592860 |
aaccctcccatgttgcatctattcttaaaagggacattattgtgagattcatgtcttgtctcacttttaagacatgtaaaattagctccatatggattat |
49592959 |
T |
|
| Q |
476 |
ttaatgtgtcacaaaagatgaatgtgtgagtaagttatttgatgagtatttttatattaattaagtaaccgaggtgtggttaaatagtaggtttttaact |
575 |
Q |
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| T |
49592960 |
ttaatgtgtcacaaaagatgaatgtgtgagtaagttatttgatgagtatttttatattaattaagtaaccgaggtgtggttaaatagtaggtttttaact |
49593059 |
T |
|
| Q |
576 |
ggtttttatcttatataaaatggatagagttgtagctatgtagtaacaacttgatcacaatcttgtgcccttcacctaaatttcctaggattaccttaac |
675 |
Q |
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| T |
49593060 |
ggtttttatcttatataaaatggatagagttgtagctatgtagtaacaacttgatcacaatcttgtgcccttcacctaaatttcctaggattaccttaac |
49593159 |
T |
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| Q |
676 |
taatggttttgtcttatagtctcacctgtataaataacgtattaaaataaagggaaatgctaacttatacttttgggcata |
756 |
Q |
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| T |
49593160 |
taatggttttgtcttatagtctcacctgtataaataacgtattaaaataaagggaaatgctaacttatatttttgggcata |
49593240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 49592453 - 49592524
Alignment:
| Q |
9 |
ataatcacaagtatttccatcaaaagaatattaacattaaacatgattccacatacacatttgtcccataag |
80 |
Q |
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| T |
49592453 |
ataatcacaagtatttccatcaaaagattattaacattaaacatgattccacatccacatttgtcccataag |
49592524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 104 - 580
Target Start/End: Complemental strand, 7235463 - 7234986
Alignment:
| Q |
104 |
cgattaccttaggataattattgaagttggtcttaagaacatgttcaacattaacaggatcagcaatgtatgtataagttgtgaacggcatggggaccac |
203 |
Q |
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| T |
7235463 |
cgattacttttgggtaattactgaagttggtcttaagaacatgttcaacattaacaggatcagcaatgtatgtataagttgtgaacggcatggggacaac |
7235364 |
T |
|
| Q |
204 |
aacagttttggacatggaaaaatattggacaagccaatcatgcattctatcatagttcatcaattgttcaattgcagctccaagaaatggccaagttttg |
303 |
Q |
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| T |
7235363 |
aacagttttggacatggaaaaatattggacaagccaatcatgcattctatcatagttcatcaattgttcaattgcagctccaagaaatggccaagttttg |
7235264 |
T |
|
| Q |
304 |
ggtccttttttgttcctttgactccatctatgtaagaatatccatgaaacaatcatgcatatcaatatcactaaccctcccat---gttgcatctattct |
400 |
Q |
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| T |
7235263 |
ggtccttttttgttcctttgactccatctatgtaagaatatccatgaaaaaatcatgcatatcaatatcactaaccctcccatgttgttgtatctgttcc |
7235164 |
T |
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| Q |
401 |
taaaagggac-attattgtgagattcatgtcttgtctcacttttaagacatgtaaaattagctccatatggattatttaatgtgtcacaaaagatgaatg |
499 |
Q |
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| T |
7235163 |
taaaaggggcaatgattgtgagattcatgccttgtctcacttttaagacatgtaaaattagctcaatatggattatttaatgtgtcacaagagatggatg |
7235064 |
T |
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| Q |
500 |
tgtgagtaagttatttgatgagtatttttatattaattaagtaaccgaggtgtggttaaatagtaggtttttaactggttt |
580 |
Q |
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| T |
7235063 |
tgtgagt-ggttatttgatgagtatttttatattaattaagtatctgag--gtggttaaattgtaggttgctaactggttt |
7234986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 226 - 332
Target Start/End: Original strand, 8052365 - 8052472
Alignment:
| Q |
226 |
tattggacaagccaatcatgcattctatcatagttcatcaattgttcaattgcagctccaagaaatggccaagttttg-ggtccttttttgttcctttga |
324 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| | ||| |||||| || | |||||||||||||||| |
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| T |
8052365 |
tatttgacaagccaatcatgcatttcatcatagttcatcaattgttcaatgtcagcttcaagaagggaccatgttttgaggcctttttttgttcctttga |
8052464 |
T |
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| Q |
325 |
ctccatct |
332 |
Q |
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| T |
8052465 |
ctccatct |
8052472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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