View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125R-Insertion-3 (Length: 543)
Name: NF3125R-Insertion-3
Description: NF3125R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125R-Insertion-3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 8 - 543
Target Start/End: Original strand, 40288383 - 40288919
Alignment:
| Q |
8 |
aattaggtcacactctgcgggcacttcgtacacaaaacacaagatatacatacattataacaataataataacattaagcttagctaat-ttcaatttaa |
106 |
Q |
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| T |
40288383 |
aattaggtcacactctgcgggcacttcgtatacaaaacacaagatatacatacattataacaataataataacattaagcttagctaaacttcaatttaa |
40288482 |
T |
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| Q |
107 |
tatttaattctttcaaaatttgtttggttcatcatttgataaaaattgttttatttataccgcgatttgatatcactcaacacaaaatcgtataatttgc |
206 |
Q |
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| T |
40288483 |
tatttaattctttcaaaatttgtttggttcatcatttgataaaaattattttatttataccgcgatttgatatcactcaacacaaaatcatataatttgc |
40288582 |
T |
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| Q |
207 |
aaaaatgaggaaggaaggaaggaatgtgcatatgagacaaacatgcatacaaaaataatgtgagttgttattttcagattgaccctgcaaagtataagag |
306 |
Q |
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| T |
40288583 |
aaaaatgaggaaggaaggaaggaatgtgtatatgagacaaacatgcatacaaaaataatgtgagttgttattttcagattgaccctgcaaagtataagag |
40288682 |
T |
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| Q |
307 |
catcagttcaggatttggagttttacttaaggagcagggtgttagaggtttcttcaaaggctgggtgccaactttgcttggttacagtgctcaaggagca |
406 |
Q |
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| T |
40288683 |
catcagttcaggatttggagttttacttaaggagcagggtgttagaggtttcttcaaaggctgggtgccaactttgcttggttacagtgctcaaggagca |
40288782 |
T |
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| Q |
407 |
tgcaagtttggattttatgagttcttcaaaaagtattactcagatcttgatggaccagagaatgcagtcaagtacaaaactttcatatatctagctggtt |
506 |
Q |
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| T |
40288783 |
tgcaagtttggattttacgagttcttcaaaaagtattactcagatcttgctggaccagagaatgcagtcaagtacaaaactttcatatatctagctggtt |
40288882 |
T |
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| Q |
507 |
ctgcttcagcagaagttattgctgattgtgcactttg |
543 |
Q |
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| T |
40288883 |
ctgcttcagcagaagttattgctgattgtgcactttg |
40288919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 278 - 531
Target Start/End: Complemental strand, 32261200 - 32260947
Alignment:
| Q |
278 |
tttcagattgaccctgcaaagtataagagcatcagttcaggatttggagttttacttaaggagcagggtgttagaggtttcttcaaaggctgggtgccaa |
377 |
Q |
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| T |
32261200 |
tttcagattgaccctgccaagtacaagagcatctcatcagggtttggagttttgttcaaggagcagggagttaagggatttttccgcggatgggtgccaa |
32261101 |
T |
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| Q |
378 |
ctttgcttggttacagtgctcaaggagcatgcaagtttggattttatgagttcttcaaaaagtattactcagatcttgatggaccagagaatgcagtcaa |
477 |
Q |
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| T |
32261100 |
cattacttggttacagtgcccagggtgcttgcaaatttgggttctatgagttctttaagaagtactattctgatattgctggccccgagtatgcagccaa |
32261001 |
T |
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| Q |
478 |
gtacaaaactttcatatatctagctggttctgcttcagcagaagttattgctga |
531 |
Q |
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| T |
32261000 |
gtacaagaccttgatctaccttgctggttcagcatctgctgaggttattgctga |
32260947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 471
Target Start/End: Original strand, 10599829 - 10600022
Alignment:
| Q |
278 |
tttcagattgaccctgcaaagtataagagcatcagttcaggatttggagttttacttaaggagcagggtgttagaggtttcttcaaaggctgggtgccaa |
377 |
Q |
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| T |
10599829 |
tttcagattgaccctgctaagtacaagagcatttcctcaggatttggagtgatgctcaaggaacaaggatttaaaggatttttcagaggatgggcaccaa |
10599928 |
T |
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| Q |
378 |
ctttgcttggttacagtgctcaaggagcatgcaagtttggattttatgagttcttcaaaaagtattactcagatcttgatggaccagagaatgc |
471 |
Q |
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| T |
10599929 |
catttcttggttacagtgcacaaggtgctttcaaatatgggctttatgagtatttcaagaagtcctattcagatgttgttggtccagaaaatgc |
10600022 |
T |
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