View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3125R-Insertion-4 (Length: 524)

Name: NF3125R-Insertion-4
Description: NF3125R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3125R-Insertion-4
NF3125R-Insertion-4
[»] chr7 (2 HSPs)
chr7 (143-520)||(43939308-43939701)
chr7 (10-99)||(43939113-43939202)
[»] chr1 (4 HSPs)
chr1 (143-258)||(32626905-32627015)
chr1 (143-257)||(24489802-24489911)
chr1 (143-257)||(24498136-24498245)
chr1 (143-257)||(24485307-24485416)
[»] chr5 (2 HSPs)
chr5 (143-257)||(34289973-34290082)
chr5 (143-257)||(34296607-34296716)


Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 143 - 520
Target Start/End: Original strand, 43939308 - 43939701
Alignment:
Q  143 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttata----------------tatattgccatacacaatggcc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||                ||||||||||||||| ||||||    
T  43939308 tacgctccactaatagtaggagttagttttctatactgtgtatcattctgtaactatatatatatatatatatatatatatattgccatacactatggcc 43939407  T
Q  227 atcagaatcatagaattatcattcccttttaagaccaaagtaaaatttaaaaataaccaaagggttcaaaagtgtaatttagggatttagattagacgcg 326  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939408 atcagaatcattgaattatcattcccttttaagaccaaagtaaaatttaaaaataaccaaagggttcaaaagtgtaatttagggatttagattagacgcg 43939507  T
Q  327 gtaactctaagacttggccgtttgatttaaatctacggccaagatcagttaactatgaaactggctatgtaatataaacaatcctatctcaaatcaacga 426  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939508 gtaactctgagacttggccgtttgatttgaatctacggccaagatcagttaactatgaaactggctatgtaatataaacaatcctatctcaaatcaacga 43939607  T
Q  427 acaaaatcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagactcttgttaat 520  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  43939608 tcaaaatcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagaattttgttaat 43939701  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 43939113 - 43939202
Alignment:
Q  10 aatacatcatatccctagaaagaatatgaacctacatgtacataacaatacattattgcacaagttgagtagataaattccattttgatc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939113 aatacatcatatccctagaaagaatatgaacctacatgtacataacaatacattattgcacaagttgagtagataaattccattttgatc 43939202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 32627015 - 32626905
Alignment:
Q  143 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||| || |||    
T  32627015 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 32626922  T
Q  242 ttatcattcccttttaa 258  Q
    |||||||||||||||||    
T  32626921 ttatcattcccttttaa 32626905  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 143 - 257
Target Start/End: Complemental strand, 24489911 - 24489802
Alignment:
Q  143 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||| || |||    
T  24489911 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 24489818  T
Q  242 ttatcattccctttta 257  Q
    ||||||||||||||||    
T  24489817 ttatcattccctttta 24489802  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 143 - 257
Target Start/End: Complemental strand, 24498245 - 24498136
Alignment:
Q  143 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||| || |||    
T  24498245 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 24498152  T
Q  242 ttatcattccctttta 257  Q
    ||||||||||||||||    
T  24498151 ttatcattccctttta 24498136  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 143 - 257
Target Start/End: Complemental strand, 24485416 - 24485307
Alignment:
Q  143 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  |||||||||||  || || |||    
T  24485416 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtgtcaattgaa 24485323  T
Q  242 ttatcattccctttta 257  Q
    ||||||||||||||||    
T  24485322 ttatcattccctttta 24485307  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 143 - 257
Target Start/End: Original strand, 34289973 - 34290082
Alignment:
Q  143 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||| || |||    
T  34289973 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 34290066  T
Q  242 ttatcattccctttta 257  Q
    ||||||||||||||||    
T  34290067 ttatcattccctttta 34290082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 143 - 257
Target Start/End: Original strand, 34296607 - 34296716
Alignment:
Q  143 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||| || |||    
T  34296607 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 34296700  T
Q  242 ttatcattccctttta 257  Q
    ||||||||||||||||    
T  34296701 ttatcattccctttta 34296716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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