View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3125R-Insertion-5 (Length: 482)

Name: NF3125R-Insertion-5
Description: NF3125R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3125R-Insertion-5
NF3125R-Insertion-5
[»] chr6 (4 HSPs)
chr6 (202-289)||(20599416-20599503)
chr6 (203-289)||(6922659-6922745)
chr6 (203-285)||(12606651-12606733)
chr6 (202-287)||(21023710-21023795)
[»] chr3 (11 HSPs)
chr3 (189-289)||(3313490-3313590)
chr3 (246-288)||(7950929-7950971)
chr3 (250-287)||(51816021-51816058)
chr3 (204-285)||(54240605-54240686)
chr3 (211-287)||(32594563-32594639)
chr3 (202-289)||(38745317-38745404)
chr3 (202-294)||(21177059-21177150)
chr3 (255-285)||(51829633-51829663)
chr3 (205-287)||(55009521-55009603)
chr3 (212-284)||(33439978-33440050)
chr3 (195-287)||(44856261-44856353)
[»] chr1 (3 HSPs)
chr1 (198-289)||(7550009-7550100)
chr1 (203-289)||(2098743-2098828)
chr1 (223-287)||(44729823-44729887)
[»] chr4 (14 HSPs)
chr4 (202-292)||(49479450-49479540)
chr4 (202-287)||(31351697-31351782)
chr4 (202-287)||(40981810-40981895)
chr4 (202-289)||(35130635-35130722)
chr4 (205-289)||(13538282-13538366)
chr4 (202-289)||(35010407-35010494)
chr4 (166-289)||(44294257-44294382)
chr4 (205-286)||(55967780-55967861)
chr4 (202-289)||(50264014-50264100)
chr4 (202-285)||(42657503-42657586)
chr4 (203-285)||(3746412-3746493)
chr4 (202-264)||(10601888-10601950)
chr4 (260-289)||(45872386-45872415)
chr4 (205-289)||(25273096-25273179)
[»] chr5 (3 HSPs)
chr5 (195-287)||(36730199-36730290)
chr5 (202-286)||(43406028-43406112)
chr5 (202-284)||(30327657-30327739)
[»] chr2 (4 HSPs)
chr2 (200-287)||(31068915-31069002)
chr2 (218-286)||(34028097-34028165)
chr2 (257-289)||(9199009-9199041)
chr2 (205-285)||(8915565-8915645)
[»] chr7 (10 HSPs)
chr7 (205-289)||(9667258-9667342)
chr7 (218-286)||(40097948-40098015)
chr7 (203-285)||(36876997-36877079)
chr7 (200-289)||(32958486-32958575)
chr7 (204-288)||(19554704-19554788)
chr7 (227-290)||(45664673-45664736)
chr7 (202-276)||(13054605-13054679)
chr7 (260-289)||(45967443-45967472)
chr7 (250-286)||(44165959-44165995)
chr7 (205-289)||(47684514-47684598)
[»] scaffold0040 (1 HSPs)
scaffold0040 (170-289)||(58637-58754)
[»] chr8 (5 HSPs)
chr8 (205-289)||(28300084-28300168)
chr8 (210-289)||(12959704-12959783)
chr8 (256-289)||(9209641-9209674)
chr8 (203-239)||(29170814-29170850)
chr8 (257-289)||(31441264-31441296)


Alignment Details
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 20599416 - 20599503
Alignment:
Q  202 gtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggga 289  Q
    ||||||||||||||| |||||||| ||| ||| ||||||||| || ||| ||| ||||||||||||||||||||||||||||||||||    
T  20599416 gtgtggagaagtggggaatccggggttcaaaccccgacccttgcacataatatccctggtagctaccaactgagctacacttacggga 20599503  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 6922659 - 6922745
Alignment:
Q  203 tgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggga 289  Q
    |||||||||||||| |||| ||  || |||| ||||||| | || | ||||||| ||||||||||||||||| ||||||||||||||    
T  6922659 tgtggagaagtggggaatctggagtttgaaccccgacccctgcacaaattattcatggtagctaccaactgaactacacttacggga 6922745  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 12606733 - 12606651
Alignment:
Q  203 tgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttac 285  Q
    |||| ||||||||| |||| ||| |||||||  |||  | |||| | ||||| ||| ||||||||||||||||||||||||||    
T  12606733 tgtgaagaagtggggaatctggggttcgaacctcgattcctacacaaattatccctagtagctaccaactgagctacacttac 12606651  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 21023710 - 21023795
Alignment:
Q  202 gtgtggagaagtgggaaatccgggattcgaa-ctccgacccttacaaatattattcctggtagctaccaactgagctacacttacgg 287  Q
    ||||||||||||||  |||||||| |||||| ||| |  ||| ||| | ||||| ||||||||||||||| ||||||||||||||||    
T  21023710 gtgtggagaagtggagaatccggggttcgaatctcagttcct-acacaaattatccctggtagctaccaattgagctacacttacgg 21023795  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 189 - 289
Target Start/End: Complemental strand, 3313590 - 3313490
Alignment:
Q  189 cacacattttaaagtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggg 288  Q
    ||||| |||||||||||||||||||||| ||||  |||||||||||||| | | | |||||||| | | ||||||||||||||||||| |||||||||||    
T  3313590 cacactttttaaagtgtggagaagtggggaatctaggattcgaactccggctcctgcaaatattgtccttggtagctaccaactgagccacacttacggg 3313491  T
Q  289 a 289  Q
    |    
T  3313490 a 3313490  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 7950971 - 7950929
Alignment:
Q  246 aaatattattcctggtagctaccaactgagctacacttacggg 288  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  7950971 aaatattatccctggtagctaccaactgagctacacttacggg 7950929  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 51816058 - 51816021
Alignment:
Q  250 attattcctggtagctaccaactgagctacacttacgg 287  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  51816058 attatccctggtagctaccaactgagctacacttacgg 51816021  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 54240686 - 54240605
Alignment:
Q  204 gtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttac 285  Q
    |||||||||||| ||||||| | ||||||| ||||||| | || ||||| | | |||||||| |||||||||||||| ||||    
T  54240686 gtggagaagtggaaaatccgaggttcgaaccccgacccctgcacatattgtccttggtagctgccaactgagctacatttac 54240605  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 32594639 - 32594563
Alignment:
Q  211 agtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacgg 287  Q
    |||||||||| |||| ||||||| ||||||  |||| | |||||||||  || ||||||||||| ||||||||||||    
T  32594639 agtgggaaattcggggttcgaaccccgaccactacacaaattattcctattaactaccaactgaactacacttacgg 32594563  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 38745317 - 38745404
Alignment:
Q  202 gtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggga 289  Q
    ||||||||||||||| ||| |||| ||||||  ||||||| | || | ||||| ||||||| | ||||||| ||||||| ||||||||    
T  38745317 gtgtggagaagtggggaattcggggttcgaatcccgacccctgcacaaattatccctggtaaccaccaactaagctacatttacggga 38745404  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 21177059 - 21177150
Alignment:
Q  202 gtgtggagaagtgggaaatccgggattcgaactccgaccct-tacaaatattattcctggtagctaccaactgagctacacttacgggatcaaa 294  Q
    ||||||||||||||| ||| || | ||||||||  |||||| |||||||  | |  ||||||||||||||||||| || |||||||||||||||    
T  21177059 gtgtggagaagtggggaattcgaggttcgaactttgaccctgtacaaattgtct--ctggtagctaccaactgaggtatacttacgggatcaaa 21177150  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 285
Target Start/End: Original strand, 51829633 - 51829663
Alignment:
Q  255 tcctggtagctaccaactgagctacacttac 285  Q
    |||||||||||||||||||||||||||||||    
T  51829633 tcctggtagctaccaactgagctacacttac 51829663  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 55009603 - 55009521
Alignment:
Q  205 tggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacgg 287  Q
    |||||||||| |||||||||| ||||||| |||  |  |||| | ||||| |||  |||||||||| ||||||||||||||||    
T  55009603 tggagaagtgagaaatccggggttcgaaccccggtctctacacaaattatccctaatagctaccaattgagctacacttacgg 55009521  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 33440050 - 33439978
Alignment:
Q  212 gtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacactta 284  Q
    |||| |||| ||| |||| ||| ||||||| |||| | |||||| ||| |||||||||| |||||||||||||    
T  33440050 gtggaaaattcggaattcaaaccccgacccctacacaaattatttctgatagctaccaagtgagctacactta 33439978  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 44856353 - 44856261
Alignment:
Q  195 ttttaaagtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacgg 287  Q
    ||||||| ||||||||||| | ||||| ||  |||||||||||| || | || ||| |||   || ||||||||||||||||| |||||||||    
T  44856353 ttttaaaatgtggagaagtagaaaatctggagttcgaactccgatccctgcagataatatctgtgatagctaccaactgagctgcacttacgg 44856261  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 7550100 - 7550009
Alignment:
Q  198 taaagtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggga 289  Q
    ||||||||||||||||||| |||||||| ||||||| ||| ||| | |||||| | |  |||||||||| ||||||||||||||||||||||    
T  7550100 taaagtgtggagaagtggggaatccggggttcgaaccccggcccctgcaaataatgtctctggtagctatcaactgagctacacttacggga 7550009  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 2098828 - 2098743
Alignment:
Q  203 tgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggga 289  Q
    |||||||||||||  |||||||| |||| | |||| |||| ||| ||| ||| | | ||||||||||||||||||||||||| ||||    
T  2098828 tgtggagaagtggagaatccggggttcggattccgcccct-acacataatatccattgtagctaccaactgagctacacttatggga 2098743  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 44729887 - 44729823
Alignment:
Q  223 gggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacgg 287  Q
    |||||| |||| || ||||||| ||| |||||  |||||||||| ||||||| ||||||||||||    
T  44729887 gggatttgaaccccaacccttataaacattatctctggtagctatcaactgaactacacttacgg 44729823  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 49479540 - 49479450
Alignment:
Q  202 gtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacgggatca 292  Q
    |||||||||||| |||||| |||||||||||| || |||| |||| | |||||| ||| |||||||||||||| ||||||||| |||||||    
T  49479540 gtgtggagaagttggaaattcgggattcgaacccctacccctacataaattatttctgatagctaccaactgaactacacttatgggatca 49479450  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 31351697 - 31351782
Alignment:
Q  202 gtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacgg 287  Q
    |||||||||| ||||||||||||  ||||||| ||||||| | || | |||||  |||||||||||||||||||||||||||||||    
T  31351697 gtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaattatctctggtagctaccaactgagctacacttacgg 31351782  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 40981810 - 40981895
Alignment:
Q  202 gtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacgg 287  Q
    ||||||||||||||  |||| | ||||| ||||||||||| |||| | ||||| |||| |||||||||||||||||||||||||||    
T  40981810 gtgtggagaagtggagaatctgagattcaaactccgacccctacataaattatccctgctagctaccaactgagctacacttacgg 40981895  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 35130635 - 35130722
Alignment:
Q  202 gtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggga 289  Q
    ||||| |||||||||||||||||| ||||||| ||| ||| | || | |||||  |||||||||||||||||| ||||||||||||||    
T  35130635 gtgtgaagaagtgggaaatccggggttcgaaccccggcccctgcacaaattatctctggtagctaccaactgaactacacttacggga 35130722  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 13538282 - 13538366
Alignment:
Q  205 tggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggga 289  Q
    ||||||||||||||||  ||| ||||||||||  ||| |||| | |||||  ||| |||||||||||||||||||||||||||||    
T  13538282 tggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagctaccaactgagctacacttacggga 13538366  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 35010407 - 35010494
Alignment:
Q  202 gtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggga 289  Q
    |||||||||||||||||||||||  ||||||| ||||| | | || | |||||  ||| |||||||||||||||||| ||||||||||    
T  35010407 gtgtggagaagtgggaaatccggagttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagctaaacttacggga 35010494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 166 - 289
Target Start/End: Original strand, 44294257 - 44294382
Alignment:
Q  166 gttcaatagtctggtgtctaaatcacaca--ttttaaagtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtag 263  Q
    ||||||||| || ||| ||| ||||||||  |||||| |||||||||||||| |||||| || ||||||||||| ||| | | |||||| | || |||||    
T  44294257 gttcaatagcctagtggctagatcacacactttttaaggtgtggagaagtggaaaatccagggttcgaactccggcccctgccaatattgtcccaggtag 44294356  T
Q  264 ctaccaactgagctacacttacggga 289  Q
    ||  |||||||| ||||||| |||||    
T  44294357 ctctcaactgaggtacacttgcggga 44294382  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 55967861 - 55967780
Alignment:
Q  205 tggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacg 286  Q
    |||||||||||| |||||||| ||||||| ||| ||| |||| | ||||| | |||||| |||||| |||||||||||||||    
T  55967861 tggagaagtggggaatccggggttcgaaccccggcccctacacaaattatccttggtagttaccaattgagctacacttacg 55967780  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 50264014 - 50264100
Alignment:
Q  202 gtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggga 289  Q
    ||||||||||||||| |||||||| ||||| | ||| ||| | || | ||||| |||| ||||||||||||||| |||||||||||||    
T  50264014 gtgtggagaagtggggaatccgggtttcgagccccggcccctgcacaaattatccctg-tagctaccaactgagttacacttacggga 50264100  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 285
Target Start/End: Complemental strand, 42657586 - 42657503
Alignment:
Q  202 gtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttac 285  Q
    ||||| ||||||||  |||  ||| ||||||||||||||| || | | |||||  ||| |||||||||||||||||||||||||    
T  42657586 gtgtgaagaagtggagaatgtggggttcgaactccgacccctatataaattatctctgatagctaccaactgagctacacttac 42657503  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 285
Target Start/End: Original strand, 3746412 - 3746493
Alignment:
Q  203 tgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttac 285  Q
    ||||||||| ||||||||||||| ||||||| |  |||| |||| ||| |||  ||||||||||||||| |||||| ||||||    
T  3746412 tgtggagaaatgggaaatccggggttcgaac-ctcacccctacacataatatctctggtagctaccaaccgagctaaacttac 3746493  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 10601950 - 10601888
Alignment:
Q  202 gtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagc 264  Q
    |||| |||||||||| |||| ||| ||| ||| ||||||||| |||| |||||||||||||||    
T  10601950 gtgtagagaagtggggaatctggggttcaaaccccgacccttgcaaaaattattcctggtagc 10601888  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 289
Target Start/End: Complemental strand, 45872415 - 45872386
Alignment:
Q  260 gtagctaccaactgagctacacttacggga 289  Q
    ||||||||||||||||||||||||||||||    
T  45872415 gtagctaccaactgagctacacttacggga 45872386  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 25273096 - 25273179
Alignment:
Q  205 tggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggga 289  Q
    |||||||||||| |||||| | ||||||| |  |||| | || ||| ||| ||| ||||||| ||||||||||||||||||||||    
T  25273096 tggagaagtggggaatccgag-ttcgaaccctaacccctgcacataatatccctagtagctatcaactgagctacacttacggga 25273179  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 36730199 - 36730290
Alignment:
Q  195 ttttaaagtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacgg 287  Q
    |||| ||||||||||||||||| |||||||| ||| || || | ||| | |||||||| | ||||||||||||||||||||||||||||||||    
T  36730199 tttttaagtgtggagaagtggggaatccggggttcaaa-tctggcccctgcaaatattgtccctggtagctaccaactgagctacacttacgg 36730290  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 43406028 - 43406112
Alignment:
Q  202 gtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacg 286  Q
    ||||||||||||||  |||| | | |||||||||||  |||| || | |||||  ||||||||||||||||||||||||||||||    
T  43406028 gtgtggagaagtggagaatctgaggttcgaactccggtccttgcacaaattatctctggtagctaccaactgagctacacttacg 43406112  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 30327739 - 30327657
Alignment:
Q  202 gtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacactta 284  Q
    ||||||||||||||  ||| |||| ||||||| ||| ||| | || | |||||  ||| ||||||||||||||||||||||||    
T  30327739 gtgtggagaagtggcgaattcggggttcgaaccccggcccctgcataaattatctctgatagctaccaactgagctacactta 30327657  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 31068915 - 31069002
Alignment:
Q  200 aagtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacgg 287  Q
    ||||||||||||||||| |||||||  ||| ||||||||||| |||| | |||||   || |||||||||||||||||||||||||||    
T  31068915 aagtgtggagaagtggggaatccggagttcaaactccgacccctacacaaattatcaatgttagctaccaactgagctacacttacgg 31069002  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 34028165 - 34028097
Alignment:
Q  218 aatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacg 286  Q
    |||||||  ||| ||||||||||| | |||| ||||| |||||||||||| ||||||||||||||||||    
T  34028165 aatccggagttcaaactccgacccctgcaaaaattatccctggtagctactaactgagctacacttacg 34028097  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 9199009 - 9199041
Alignment:
Q  257 ctggtagctaccaactgagctacacttacggga 289  Q
    |||||||||||||||||||||||||||||||||    
T  9199009 ctggtagctaccaactgagctacacttacggga 9199041  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 8915645 - 8915565
Alignment:
Q  205 tggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttac 285  Q
    |||||||||||| |||||||| | ||||| || |||| | || | |||||| ||| |||||||||||||| || |||||||    
T  8915645 tggagaagtggggaatccggggtacgaaccccaacccattcacaaattatttctgatagctaccaactgaacttcacttac 8915565  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 9667258 - 9667342
Alignment:
Q  205 tggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggga 289  Q
    ||||||||||||||||  ||| ||||||||||  ||| |||| | |||||  ||| |||||||||||||||||||||||||||||    
T  9667258 tggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagctaccaactgagctacacttacggga 9667342  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 40097948 - 40098015
Alignment:
Q  218 aatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacg 286  Q
    |||||||| ||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||| ||||    
T  40097948 aatccggg-ttcaaactccgacccctacaaaaattattcctagtagctaccaactgagctacacgtacg 40098015  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 203 - 285
Target Start/End: Original strand, 36876997 - 36877079
Alignment:
Q  203 tgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttac 285  Q
    ||||||||||||||||||||||| ||||||| ||||||| | || | ||||| | || ||||||||||||||||  |||||||    
T  36876997 tgtggagaagtgggaaatccggggttcgaaccccgacccctgcacaaattatccatgttagctaccaactgagcatcacttac 36877079  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 32958575 - 32958486
Alignment:
Q  200 aagtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggga 289  Q
    ||||||||| ||||||  |||||||| ||||||||| ||| | | || | ||||||  |||||||||||||| |||||||||||||||||    
T  32958575 aagtgtggataagtggagaatccggggttcgaactctgactcctgcacaaattatttttggtagctaccaaccgagctacacttacggga 32958486  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 19554788 - 19554704
Alignment:
Q  204 gtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggg 288  Q
    ||||||||| ||| ||||| |  |||||||  |||||| | |||||||| | | |||||||||||||||||||||||||||||||    
T  19554788 gtggagaagcggggaatccagttttcgaaccacgacccctgcaaatattgtccttggtagctaccaactgagctacacttacggg 19554704  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 45664736 - 45664673
Alignment:
Q  227 ttcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacgggat 290  Q
    ||||||| || |||| |||||| |||||  || |||||||||||||||||||||||||||||||    
T  45664736 ttcgaaccccaacccctacaaacattatctctagtagctaccaactgagctacacttacgggat 45664673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 276
Target Start/End: Complemental strand, 13054679 - 13054605
Alignment:
Q  202 gtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagc 276  Q
    |||||||||||||||||||| ||| ||||||| ||| ||| | || ||||| | ||||||||||||||| |||||    
T  13054679 gtgtggagaagtgggaaatctggggttcgaaccccggcccctgcacatattttccctggtagctaccaattgagc 13054605  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 289
Target Start/End: Original strand, 45967443 - 45967472
Alignment:
Q  260 gtagctaccaactgagctacacttacggga 289  Q
    ||||||||||||||||||||||||||||||    
T  45967443 gtagctaccaactgagctacacttacggga 45967472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 44165959 - 44165995
Alignment:
Q  250 attattcctggtagctaccaactgagctacacttacg 286  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  44165959 attatccctggtagctaccaactgagctgcacttacg 44165995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 47684514 - 47684598
Alignment:
Q  205 tggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggga 289  Q
    ||||||||| ||||||||||| ||| ||| || |||| | || | ||||| | |||||||  ||||||||||||||| |||||||    
T  47684514 tggagaagtaggaaatccggggttcaaaccccaacccctgcacaaattatccttggtagcccccaactgagctacacctacggga 47684598  T

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Target: scaffold0040 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 289
Target Start/End: Original strand, 58637 - 58754
Alignment:
Q  170 aatagtctggtgtcta-aatcacacattttaaagtgtggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctacc 268  Q
    |||||||| ||| ||| |||||||||| | || |||||||||||||||||||||||| |||||||| || |||  |||| | || ||  || ||||||||    
T  58637 aatagtctagtggctagaatcacacatat-aatgtgtggagaagtgggaaatccggggttcgaacttcggcccgcacaatttttctt--tgatagctacc 58733  T
Q  269 aactgagctacacttacggga 289  Q
    |||||||||||| ||||||||    
T  58734 aactgagctacatttacggga 58754  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 289
Target Start/End: Complemental strand, 28300168 - 28300084
Alignment:
Q  205 tggagaagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggga 289  Q
    |||||||||||| |||||||| ||||||| ||| ||| | || | |||||   |||||||||||||||||||||||| |||||||    
T  28300168 tggagaagtggggaatccggggttcgaaccccggcccctgcacaaattatcattggtagctaccaactgagctacacctacggga 28300084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 12959783 - 12959704
Alignment:
Q  210 aagtgggaaatccgggattcgaactccgacccttacaaatattattcctggtagctaccaactgagctacacttacggga 289  Q
    ||||||| |||| ||| ||||||| || |||| | || |  |||| |||| |||||||||||||||||||||||||||||    
T  12959783 aagtggggaatctggggttcgaaccccaacccctgcacaagttatccctgatagctaccaactgagctacacttacggga 12959704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 9209641 - 9209674
Alignment:
Q  256 cctggtagctaccaactgagctacacttacggga 289  Q
    |||||||||||||||| |||||||||||||||||    
T  9209641 cctggtagctaccaacggagctacacttacggga 9209674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 29170850 - 29170814
Alignment:
Q  203 tgtggagaagtgggaaatccgggattcgaactccgac 239  Q
    ||||||||||||||  |||||||||||||||||||||    
T  29170850 tgtggagaagtggggtatccgggattcgaactccgac 29170814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 31441296 - 31441264
Alignment:
Q  257 ctggtagctaccaactgagctacacttacggga 289  Q
    ||||||||||||||||||||||||| |||||||    
T  31441296 ctggtagctaccaactgagctacacctacggga 31441264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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