View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3125R-Insertion-6 (Length: 380)

Name: NF3125R-Insertion-6
Description: NF3125R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3125R-Insertion-6
NF3125R-Insertion-6
[»] chr8 (2 HSPs)
chr8 (9-380)||(36946906-36947277)
chr8 (332-373)||(5718451-5718492)
[»] chr4 (5 HSPs)
chr4 (329-380)||(24060632-24060683)
chr4 (338-380)||(5288578-5288620)
chr4 (332-380)||(42504198-42504246)
chr4 (334-373)||(16528629-16528668)
chr4 (299-379)||(2765331-2765419)
[»] chr7 (6 HSPs)
chr7 (332-380)||(44601056-44601104)
chr7 (332-376)||(20125650-20125694)
chr7 (332-380)||(21882773-21882821)
chr7 (332-380)||(46413747-46413795)
chr7 (338-380)||(46297669-46297711)
chr7 (338-378)||(8123749-8123789)
[»] scaffold0122 (1 HSPs)
scaffold0122 (329-380)||(18690-18741)
[»] chr1 (9 HSPs)
chr1 (332-380)||(10061648-10061696)
chr1 (332-380)||(21540130-21540178)
chr1 (332-380)||(43537149-43537197)
chr1 (329-376)||(26470004-26470051)
chr1 (312-373)||(23906591-23906651)
chr1 (336-380)||(35149672-35149716)
chr1 (332-378)||(29657422-29657468)
chr1 (339-373)||(33077750-33077784)
chr1 (338-378)||(4684526-4684566)
[»] chr5 (4 HSPs)
chr5 (335-378)||(7547323-7547366)
chr5 (332-380)||(3040264-3040312)
chr5 (338-378)||(20359971-20360011)
chr5 (332-380)||(30700874-30700922)
[»] chr2 (6 HSPs)
chr2 (334-377)||(14131215-14131258)
chr2 (333-378)||(37714481-37714526)
chr2 (338-373)||(3167959-3167994)
chr2 (332-378)||(38320204-38320250)
chr2 (309-373)||(5881413-5881476)
chr2 (336-376)||(27407482-27407522)
[»] chr6 (1 HSPs)
chr6 (334-380)||(6784708-6784754)
[»] chr3 (5 HSPs)
chr3 (332-378)||(1632866-1632912)
chr3 (332-378)||(2671961-2672007)
chr3 (332-378)||(34905904-34905950)
chr3 (337-378)||(18271972-18272013)
chr3 (335-380)||(45852941-45852986)


Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 380
Target Start/End: Original strand, 36946906 - 36947277
Alignment:
Q  9 tttatcactttcgtatcggatactgttggcactttggcatcagctaccaccattgtcgtggtgctggattatgatggttatactaggtcgatatcgacat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36946906 tttatcactttcgtatcggatactgttggcactttggcatcagctaccaccattgtcgtggtgctggattatgatggttatactaggtcgatatcgacat 36947005  T
Q  109 ctaggatcaacatgtggctcaaatgaccctcttcatgacactcttgataagttgaagtttacgttactactagtgtcaatttattttctattgtttttta 208  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  36947006 ctaggatcaacatgtggctcaaatgaccctcttgatgacactcttgataagttgaagtttacgttactactggtgtcaatttattttcttttgtttttta 36947105  T
Q  209 tcaaatcaatctcaagctgtcggaggatttacaggttcggttagaattacattggccaaatctgttatctcacttaattaaatcttaggaaaatgcttga 308  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36947106 tcaaatcaatctcaagttgtctgaggatttacaggttcggttagaattactttggccaaatctgttatctcacttaattaaatcttagggaaatgcttga 36947205  T
Q  309 tacagtgacaaaatgtatcaaaaacagtgtatttgctaacacatttctttaattacacatcattatctccct 380  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||| ||||||    
T  36947206 tacagtgacaaaatgtatcaaaaacagtgtatttattaacacatttctttaattatacatcattacctccct 36947277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 5718451 - 5718492
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcatta 373  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  5718451 acagtgtatttgctaacacatttccttaattacacaccatta 5718492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 24060683 - 24060632
Alignment:
Q  329 aaaacagtgtatttgctaacacatttctttaattacacatcattatctccct 380  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  24060683 aaaacagtgtatttgctaacacatttccttaattacacaccattatctccct 24060632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 5288620 - 5288578
Alignment:
Q  338 tatttgctaacacatttctttaattacacatcattatctccct 380  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  5288620 tatttgctaacacatttttttaattacacaccattatctccct 5288578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 42504198 - 42504246
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcattatctccct 380  Q
    |||||||||||| |||||| |||| ||||||||||||||||| ||||||    
T  42504198 acagtgtatttgttaacacctttccttaattacacatcattacctccct 42504246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 334 - 373
Target Start/End: Complemental strand, 16528668 - 16528629
Alignment:
Q  334 agtgtatttgctaacacatttctttaattacacatcatta 373  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  16528668 agtgtatttgttaacacatttctttaattacacaccatta 16528629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 2765331 - 2765419
Alignment:
Q  299 aaatgcttgatacagtgacaaaatgtatcaaaa-------acagtgta-tttgctaacacatttctttaattacacatcattatctccc 379  Q
    |||||||||||| ||||||||||||||||||||       ||| |||| |||  |||||| |||| |||||||||||||||||||||||    
T  2765331 aaatgcttgatatagtgacaaaatgtatcaaaaattcaagacactgtatttttttaacacctttcattaattacacatcattatctccc 2765419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 44601104 - 44601056
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcattatctccct 380  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  44601104 acagtgtatttgctaacacattttcttaattacacatcattatctccct 44601056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 20125694 - 20125650
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcattatct 376  Q
    |||||||||||||||| || |||||||||||||||| ||||||||    
T  20125694 acagtgtatttgctaatacctttctttaattacacaccattatct 20125650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 21882773 - 21882821
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcattatctccct 380  Q
    ||||||||||||||||||| |||| ||||||||||| ||||| ||||||    
T  21882773 acagtgtatttgctaacacttttccttaattacacaccattacctccct 21882821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 46413747 - 46413795
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcattatctccct 380  Q
    |||||||||||| |||||| |||| ||||||||||||||||| ||||||    
T  46413747 acagtgtatttgttaacacctttccttaattacacatcattacctccct 46413795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 46297711 - 46297669
Alignment:
Q  338 tatttgctaacacatttctttaattacacatcattatctccct 380  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||    
T  46297711 tatttgctaacacatttccttaattacacaccattaactccct 46297669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 8123789 - 8123749
Alignment:
Q  338 tatttgctaacacatttctttaattacacatcattatctcc 378  Q
    ||||||||||||| |||||||||||| |||| |||||||||    
T  8123789 tatttgctaacacctttctttaattatacattattatctcc 8123749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 18741 - 18690
Alignment:
Q  329 aaaacagtgtatttgctaacacatttctttaattacacatcattatctccct 380  Q
    ||||||||||||||||||||||||||| |||||||| || ||||||||||||    
T  18741 aaaacagtgtatttgctaacacatttccttaattactcaccattatctccct 18690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 10061696 - 10061648
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcattatctccct 380  Q
    ||||| |||||||||||||||||| ||||||||||||||||| ||||||    
T  10061696 acagtttatttgctaacacatttccttaattacacatcattacctccct 10061648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 21540178 - 21540130
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcattatctccct 380  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||||    
T  21540178 acagtgtatttgttaacacctttctttaattacacttcattatctccct 21540130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 43537149 - 43537197
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcattatctccct 380  Q
    |||||||||||| ||||||||||||||||||||||| ||||| ||||||    
T  43537149 acagtgtatttgttaacacatttctttaattacacaccattacctccct 43537197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 26470051 - 26470004
Alignment:
Q  329 aaaacagtgtatttgctaacacatttctttaattacacatcattatct 376  Q
    |||||||||||||||||||||| |||| ||||||||||| ||||||||    
T  26470051 aaaacagtgtatttgctaacacctttccttaattacacaccattatct 26470004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 23906591 - 23906651
Alignment:
Q  312 agtgacaaaatgtatcaaaaacagtgtatttgctaacacatttctttaattacacatcatta 373  Q
    ||||||||| |||||||| | || ||||||||||||||| |||||||||||||||| |||||    
T  23906591 agtgacaaactgtatcaaga-caatgtatttgctaacacctttctttaattacacaccatta 23906651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 380
Target Start/End: Original strand, 35149672 - 35149716
Alignment:
Q  336 tgtatttgctaacacatttctttaattacacatcattatctccct 380  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||||    
T  35149672 tgtatttgctaacacctttccttaattatacatcattatctccct 35149716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 29657468 - 29657422
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcattatctcc 378  Q
    ||||||||||||||||||| |||| ||||||||| ||||||| ||||    
T  29657468 acagtgtatttgctaacacctttccttaattacatatcattacctcc 29657422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 373
Target Start/End: Complemental strand, 33077784 - 33077750
Alignment:
Q  339 atttgctaacacatttctttaattacacatcatta 373  Q
    |||||||||||||||| ||||||||||||||||||    
T  33077784 atttgctaacacatttatttaattacacatcatta 33077750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 4684566 - 4684526
Alignment:
Q  338 tatttgctaacacatttctttaattacacatcattatctcc 378  Q
    ||||||||||||| |||| ||||||||||| ||||||||||    
T  4684566 tatttgctaacacctttccttaattacacaccattatctcc 4684526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 7547366 - 7547323
Alignment:
Q  335 gtgtatttgctaacacatttctttaattacacatcattatctcc 378  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||    
T  7547366 gtgtatttgctaacacatttccttaattacaaatcattatctcc 7547323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 3040264 - 3040312
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcattatctccct 380  Q
    ||||||||||||||||||| |||| ||||||||||| ||||| ||||||    
T  3040264 acagtgtatttgctaacacctttccttaattacacaccattacctccct 3040312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 20360011 - 20359971
Alignment:
Q  338 tatttgctaacacatttctttaattacacatcattatctcc 378  Q
    ||||||||||||| |||||||||||||||| ||||||||||    
T  20360011 tatttgctaacacctttctttaattacacaccattatctcc 20359971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 30700874 - 30700922
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcattatctccct 380  Q
    ||||||||||||||||||| |||  ||||||||||| ||||| ||||||    
T  30700874 acagtgtatttgctaacaccttttcttaattacacaacattacctccct 30700922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 334 - 377
Target Start/End: Complemental strand, 14131258 - 14131215
Alignment:
Q  334 agtgtatttgctaacacatttctttaattacacatcattatctc 377  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  14131258 agtgtatttgctaacacatttccttaattacacaccattatctc 14131215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 37714526 - 37714481
Alignment:
Q  333 cagtgtatttgctaacacatttctttaattacacatcattatctcc 378  Q
    |||||||||||||||||| |||| ||||||||||| ||||||||||    
T  37714526 cagtgtatttgctaacacctttccttaattacacaccattatctcc 37714481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 338 - 373
Target Start/End: Complemental strand, 3167994 - 3167959
Alignment:
Q  338 tatttgctaacacatttctttaattacacatcatta 373  Q
    ||||||||||||| ||||||||||||||||||||||    
T  3167994 tatttgctaacacctttctttaattacacatcatta 3167959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 38320204 - 38320250
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcattatctcc 378  Q
    |||||||||||| ||||||||||| ||| ||||||||||||| ||||    
T  38320204 acagtgtatttgataacacatttccttatttacacatcattacctcc 38320250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 5881413 - 5881476
Alignment:
Q  309 tacagtgacaaaatgtatcaaaaacagtgtatttgctaacacatttctttaattacacatcatta 373  Q
    |||| ||||||||||||| || | |||| |||||||||| || |||| |||||||||||||||||    
T  5881413 tacactgacaaaatgtattaata-cagtatatttgctaatacctttccttaattacacatcatta 5881476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 27407522 - 27407482
Alignment:
Q  336 tgtatttgctaacacatttctttaattacacatcattatct 376  Q
    |||||||||||| ||||||| ||||||||||| ||||||||    
T  27407522 tgtatttgctaatacatttccttaattacacagcattatct 27407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 380
Target Start/End: Original strand, 6784708 - 6784754
Alignment:
Q  334 agtgtatttgctaacacatttctttaattacacatcattatctccct 380  Q
    ||||||||||||||||| |||  ||||||||||| ||||||||||||    
T  6784708 agtgtatttgctaacaccttttcttaattacacaccattatctccct 6784754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 1632912 - 1632866
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcattatctcc 378  Q
    |||||||||||| |||||| |||||||||||||||| ||||| ||||    
T  1632912 acagtgtatttgttaacacgtttctttaattacacaccattacctcc 1632866  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 2672007 - 2671961
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcattatctcc 378  Q
    |||||||||||| |||||  |||| ||||||||||||||||||||||    
T  2672007 acagtgtatttgttaacatctttccttaattacacatcattatctcc 2671961  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 34905950 - 34905904
Alignment:
Q  332 acagtgtatttgctaacacatttctttaattacacatcattatctcc 378  Q
    ||||||||||||||||||| |||| ||||||| ||||||||| ||||    
T  34905950 acagtgtatttgctaacacctttccttaattatacatcattacctcc 34905904  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 378
Target Start/End: Original strand, 18271972 - 18272013
Alignment:
Q  337 gtatttgctaacacatttctttaattacacatcattatctcc 378  Q
    |||||||||||||| |||||||||||||||| ||||| ||||    
T  18271972 gtatttgctaacacctttctttaattacacaccattacctcc 18272013  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 45852941 - 45852986
Alignment:
Q  335 gtgtatttgctaacacatttctttaattacacatcattatctccct 380  Q
    |||||||||||||||| |||  ||||||||| ||||||||||||||    
T  45852941 gtgtatttgctaacaccttttcttaattacatatcattatctccct 45852986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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