View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3125R-Insertion-8 (Length: 391)

Name: NF3125R-Insertion-8
Description: NF3125R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3125R-Insertion-8
NF3125R-Insertion-8
[»] chr1 (1 HSPs)
chr1 (9-391)||(28784026-28784401)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 391
Target Start/End: Complemental strand, 28784401 - 28784026
Alignment:
Q  9 cttctaacgtacaagcgatatgcagttaaattataggatgttacataagccttcatgttttgtcctttgtaatgggtagtggtttgtatgtgtttatata 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28784401 cttctaacgtacaagcgatatgcagttaaattataggatgttacataagccttcatgttttgtcctttgtaatgggtagtggtttgtatgtgtttatata 28784302  T
Q  109 taagctaccctagcctcgatttctcaaaaaataagagacttttttgttgtatcagaacaagtgaacaacataccctcattcgaggctaaagggataaatg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28784301 taagctaccctagcctcgatttctcaaaaaataagagacttttttgttgtatcagaacaagtgaacaacatatcctcattcgaggctaaagggataaatg 28784202  T
Q  209 cttgtagcttaggccctacctgacatgccaactctagtacgcaaccnnnnnnnnnnnnnnnnnnnatgtattgttcattttgatcattgtataagcctca 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||||    
T  28784201 cttgtagcttaggccctacctgacatgccaactctagtacgcaacc-tttttatttttattttttatgtattgttcattttgatcattgtataagcctca 28784103  T
Q  309 cacttttgtccttagtttaaagggaccaggttttgatactgtaataacagcacgcagttttacacagttctcaatctttgccg 391  Q
    ||||||||||||||||||||||||||||      |||||| |||||| ||||||||||||||||||||||||||||| |||||    
T  28784102 cacttttgtccttagtttaaagggacca------gatactctaataatagcacgcagttttacacagttctcaatctctgccg 28784026  T

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