View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125_high_1 (Length: 1091)
Name: NF3125_high_1
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 968; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 968; E-Value: 0
Query Start/End: Original strand, 4 - 1003
Target Start/End: Complemental strand, 21284641 - 21283642
Alignment:
| Q |
4 |
agatggacatcatcatcatggccacaatcacatggcaacatcattagctctcaaaagtaaaaaacaagaatttgaactcaaccacacagtgacaacaatg |
103 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284641 |
agatgcacatcatcatcatggccacaatcacatggcaacatcattagctctcaaaagtaaaaaacaagaatttgaactcaaccacacagtgacaacaatg |
21284542 |
T |
|
| Q |
104 |
tgcactcacaaggaatagtactttgtcacctactcataccaaaaccaaatcacaagtgacactgtactactaagtgtttgatgtacagttgatttggtta |
203 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284541 |
tgcactcacaaggaatagtactttgtcacctactcataccaaaaccaaatcacaagtgacactgtactactaagtgtttgatgtacagttgatttggtta |
21284442 |
T |
|
| Q |
204 |
cagctgagtttaaaagtaatgtttctttaaaaagaatttgaggtaaagtgacttttgatgatttttactcttttaacttagaatgtaaattagtgtagat |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284441 |
cagctgagtttaaaagtaatgtttctttaaaaagaatttgaggtaaagtgacttttgatgatttttactcttttaacttagaatgtaaattagtgtagat |
21284342 |
T |
|
| Q |
304 |
ttttcaaatgaagccaaaagttattcattatcacattacaacatctagtcaaactaaggtttgtctgaggaagaccaaacacataggttttcactatgat |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284341 |
ttttcaaatgaagccaaaagttattcattatcacattacaacatctagtcaaactaaggtttgtctgaggaagaccaaacacataggttttcactatgat |
21284242 |
T |
|
| Q |
404 |
taagtttaatgggaataaacaaaatcaattcttctcaactatggaaccaaacactaactaagaagaaaactaaatgtagcatttgaaaagtgatttcctt |
503 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21284241 |
taagtttaatgggaataaacaaaatcaattcttctcaactatggaaccaaacactaactaagaagaaaactaaatgtagcatttgaaaagtgatttcctt |
21284142 |
T |
|
| Q |
504 |
actacatgaatttgcaatcaaaaacaaacattgacatccaaattaagcattaatcatagatttatacaatttgatcaaagtaaagtcatagattttcaca |
603 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
21284141 |
actacatgaatttgcaatcaaaaacaaacattgacatccaaattaagcattaatcatagatttatacaatttgatcaatgtaaagtcatagattttcaca |
21284042 |
T |
|
| Q |
604 |
tagaaatcaaaatgtagactaattaaacaaagaactaaaaagtatgagaagtgataccatgcaaagcagtgtgcaagcttccattgcgaatgaaatcagt |
703 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284041 |
tagaaatcaaaatgtagactaattaaacaaagaactaaaaagtatgagaagcgataccatgcaaagcagtgtgcaagcttccattgcgaatgaaatcagt |
21283942 |
T |
|
| Q |
704 |
gatgagaagtttctcatcactagcatagtaataagctctcaaaggcacaacattagggtgtctcagtctcccaatagcctccacctcagcctcaaattcc |
803 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21283941 |
gatgagaagtttttcatcactagcatagtaataagctctcaaaggcacaacattagggtgtctcagtctcccaatagcttccacctcagcctcaaattcc |
21283842 |
T |
|
| Q |
804 |
ttaaaccgtaaaccaccatcgtcgccctcactcaaccgtctaaccgccactgtcgctgccggaacagaccctttccctccaccaacaactttataaacaa |
903 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21283841 |
ttaaaccgtaaaccaccatcgtcaccctcactcaaccgtctaaccgccactgtcgctgccggaacagaccctttccctccaccaacaactttataaacaa |
21283742 |
T |
|
| Q |
904 |
tcccactcctactcttccccaccacataagctgaagccctcaacaaatcctccaattccaacccaaacccttcatccacaaccacaaatctccctttctg |
1003 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
21283741 |
tcccactcctactcttccccaccacataagctgaagccctcaacaaatcctccaattccaacccaaacccttcatccaccaccacaaatctccccttctg |
21283642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 38064295 - 38064249
Alignment:
| Q |
24 |
gccacaatcacatggcaacatcattagctctcaaaagtaaaaaacaa |
70 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| ||||||||| |
|
|
| T |
38064295 |
gccacaatcacatgtcaacattattagctctcaaaagcaaaaaacaa |
38064249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 30598559 - 30598603
Alignment:
| Q |
390 |
gttttcactatgattaagtttaatgggaataaacaaaatcaattc |
434 |
Q |
| |
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||||||||||| ||||||||||||||||| || |||||||||||| |
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| T |
30598559 |
gttttcactataattaagtttaatgggaacaaccaaaatcaattc |
30598603 |
T |
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