View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3125_high_11 (Length: 266)

Name: NF3125_high_11
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3125_high_11
NF3125_high_11
[»] chr7 (3 HSPs)
chr7 (161-250)||(43939113-43939202)
chr7 (51-117)||(43939308-43939374)
chr7 (14-59)||(43939382-43939427)
[»] chr5 (2 HSPs)
chr5 (24-117)||(34289973-34290060)
chr5 (24-117)||(34296607-34296694)
[»] chr1 (4 HSPs)
chr1 (24-117)||(24489824-24489911)
chr1 (24-117)||(24498158-24498245)
chr1 (24-117)||(32626928-32627015)
chr1 (29-117)||(24485334-24485416)


Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 43939202 - 43939113
Alignment:
Q  161 gatcaaaatggaatttatctactcaacttgtgcaataatgtattgttatgtacatgtaggttcatattctttctagggatatgatgtatt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939202 gatcaaaatggaatttatctactcaacttgtgcaataatgtattgttatgtacatgtaggttcatattctttctagggatatgatgtatt 43939113  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 43939374 - 43939308
Alignment:
Q  51 atatatataaatagttacagattgatacacagtatagaaaactaactcctactattagtggagcgta 117  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43939374 atatatatatatagttacagaatgatacacagtatagaaaactaactcctactattagtggagcgta 43939308  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 43939427 - 43939382
Alignment:
Q  14 gataattctatgattctgatggccattgtgtatggcaatatatata 59  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||    
T  43939427 gataattcaatgattctgatggccatagtgtatggcaatatatata 43939382  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 34290060 - 34289973
Alignment:
Q  24 tgattctgatggccattgtgtatggcaatatatataaatagttacagattgatacacagtatagaaaactaactcctactattagtggagcgta 117  Q
    |||| |||||||||||  ||||||||||||||||      |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34290060 tgatactgatggccataatgtatggcaatatata------gttacagactgatacacagtatagaaaactaactcctactattagtggagcgta 34289973  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 34296694 - 34296607
Alignment:
Q  24 tgattctgatggccattgtgtatggcaatatatataaatagttacagattgatacacagtatagaaaactaactcctactattagtggagcgta 117  Q
    |||| |||||||||||  ||||||||||||||||      |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34296694 tgatactgatggccataatgtatggcaatatata------gttacagactgatacacagtatagaaaactaactcctactattagtggagcgta 34296607  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 24489824 - 24489911
Alignment:
Q  24 tgattctgatggccattgtgtatggcaatatatataaatagttacagattgatacacagtatagaaaactaactcctactattagtggagcgta 117  Q
    |||| |||||||||||  ||||||||||||||||      |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24489824 tgatactgatggccataatgtatggcaatatata------gttacagactgatacacagtatagaaaactaactcctactattagtggagcgta 24489911  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 24498158 - 24498245
Alignment:
Q  24 tgattctgatggccattgtgtatggcaatatatataaatagttacagattgatacacagtatagaaaactaactcctactattagtggagcgta 117  Q
    |||| |||||||||||  ||||||||||||||||      |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24498158 tgatactgatggccataatgtatggcaatatata------gttacagactgatacacagtatagaaaactaactcctactattagtggagcgta 24498245  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 32626928 - 32627015
Alignment:
Q  24 tgattctgatggccattgtgtatggcaatatatataaatagttacagattgatacacagtatagaaaactaactcctactattagtggagcgta 117  Q
    |||| |||||||||||  ||||||||||||||||      |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32626928 tgatactgatggccataatgtatggcaatatata------gttacagactgatacacagtatagaaaactaactcctactattagtggagcgta 32627015  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 24485334 - 24485416
Alignment:
Q  29 ctgatggccattgtgtatggcaatatatataaatagttacagattgatacacagtatagaaaactaactcctactattagtggagcgta 117  Q
    |||||||||||  ||||||||||||||||      |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24485334 ctgatggccataatgtatggcaatatata------gttacagactgatacacagtatagaaaactaactcctactattagtggagcgta 24485416  T

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