View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125_high_14 (Length: 250)
Name: NF3125_high_14
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_high_14 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 55978229 - 55978445
Alignment:
| Q |
11 |
caaaggttgattttaagagttatggtgttgacaacactttcaaagagtattctaaagaaggtatttcttttacaaagtacacaaacgcgagtttgagttt |
110 |
Q |
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| T |
55978229 |
caaaggttgattttaagggttatggtgttgacaacactttcaaagagtattctaaagaaggtgtttcttttgcaaagtacacaaacgcgagtttgagttt |
55978328 |
T |
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| Q |
111 |
aagtgcttctatggaaatgaaaaagagcacggtgagtggtagtttggtcaaaacatcggttgaaccgggtaagttttttcgggaaaacatgttgaaagaa |
210 |
Q |
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| T |
55978329 |
aaatgcttctatggaaatgaaaaagagcacggtgagtggtagtttggtcaaaacatcggttgaaccgggtaagttttttcgggaaaacatgttgaaagaa |
55978428 |
T |
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| Q |
211 |
ggggtagtaatgcctat |
227 |
Q |
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| T |
55978429 |
gtggtagtaatgcctat |
55978445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 219 - 250
Target Start/End: Original strand, 55980013 - 55980044
Alignment:
| Q |
219 |
aatgcctatgcctgatatcagagataaattac |
250 |
Q |
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| T |
55980013 |
aatgcctatgcctgatatcagagataaattac |
55980044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 14865902 - 14866141
Alignment:
| Q |
11 |
caaaggttgattttaagagttatggtgttgacaacactttcaaagagtattctaaagaaggtatttcttttacaaagtacacaaacgcgagtttgagttt |
110 |
Q |
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| T |
14865902 |
caaaggttggttttaaaggctatggtgttaaaaatgatttcaaagagtattcgaaggaaggtgtttcttttgcaaagtacacaaacgtgagttcgagttt |
14866001 |
T |
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| Q |
111 |
aagtgcttctatggaaatgaaaaagagcacggtgagtggtagtttggtcaaaacatcggttgaaccgggtaagttttttcgggaaaacatgttgaaagaa |
210 |
Q |
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| T |
14866002 |
aagtgcttctgtgaaagtgaacaaaaatgctgcgagtggtagtttggtaaaaaaatgggttgagcctggtaagttttttagagagaaaatgttgaaagaa |
14866101 |
T |
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| Q |
211 |
ggggtagtaatgcctatgcctgatatcagagataaattac |
250 |
Q |
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| T |
14866102 |
ggtacggtaatgcctatgcctgatattagagataaattac |
14866141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 27079719 - 27079614
Alignment:
| Q |
145 |
agtggtagtttggtcaaaacatcggttgaaccgggtaagttttttcgggaaaacatgttgaaagaaggggtagtaatgcctatgcctgatatcagagata |
244 |
Q |
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|||| |||||||| |||| || |||| |||| ||||||||||| || ||||| ||||||||| ||||||| || ||||||||||| ||||| | |||| |
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| T |
27079719 |
agtgttagtttggcaaaaaaatgggttcaacctggtaagtttttccgagaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggata |
27079620 |
T |
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| Q |
245 |
aattac |
250 |
Q |
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|||||| |
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| T |
27079619 |
aattac |
27079614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 27065979 - 27065897
Alignment:
| Q |
168 |
ggttgaaccgggtaagttttttcgggaaaacatgttgaaagaaggggtagtaatgcctatgcctgatatcagagataaattac |
250 |
Q |
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| T |
27065979 |
ggttcaacctggtaagtttttccgggagaagatgttgaaggaagggacagttatgcctatgccagatataagggataaattac |
27065897 |
T |
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