View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125_high_15 (Length: 250)
Name: NF3125_high_15
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_high_15 |
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| [»] scaffold0657 (1 HSPs) |
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Alignment Details
Target: scaffold0657 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 6117 - 6354
Alignment:
| Q |
13 |
aaaataacacgacttatcaccagtaaggaagatttgtacgaactgatacctaaaacaggcacctttcgacaagggatgacattaagacaaggttcggata |
112 |
Q |
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| T |
6117 |
aaaataacacgacttatcaccactaaggaagatttgtacgaactgatacctaaaacagacacctttcgacaagggatgacattaagacaaggttcgaata |
6216 |
T |
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| Q |
113 |
gtgatggaacaagcacacgccatctctcgaagatgggagcagagtcatttaagtcctacaatttatttgagtcagaaaagatatttaccaataactctta |
212 |
Q |
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| T |
6217 |
gtaatggaacaagcacacgccatctctcgaagatgggagcggagtcatttaagtcctacaatttatttgagtcagaaaagatatttaccattaactctta |
6316 |
T |
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| Q |
213 |
gctctaagagctctcaaaagtaacatctaattttcaac |
250 |
Q |
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| T |
6317 |
gctctaagagctctcaaaagtaacatctaattttcaac |
6354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 41948365 - 41948592
Alignment:
| Q |
13 |
aaaataacacgacttatcaccagtaagg--aagatttgtacgaactgatacctaaaacaggcacctttcgacaagggatgacattaagacaaggttcgga |
110 |
Q |
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| T |
41948365 |
aaaataacacgacttattaccactatgatcaagatttttacgagttgatacctacaacaaacacttttggacaaggaatgacagtaagacaaggtttgag |
41948464 |
T |
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| Q |
111 |
tagtgatggaacaagcacacgccatctctcgaagatgggagcagagtcatttaagtcctacaatttatttgagtcagaaaagatatttaccaataactct |
210 |
Q |
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| T |
41948465 |
tagtgttggaacaagcacacatcatcccttgaagatgggagaagagtcatctaagtcctacaatctattttagtaagtaaagatttttacgatttagtct |
41948564 |
T |
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| Q |
211 |
tagctctaagagctctcaaaagtaacat |
238 |
Q |
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| T |
41948565 |
taactctaggagcttacaaaagtaacat |
41948592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 42864403 - 42864225
Alignment:
| Q |
15 |
aataacacgacttatcaccagtaagg--aagatttgtacgaactgatacctaaaacaggcacctttcgacaagggatgacattaagacaaggttcggata |
112 |
Q |
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|||||||||| ||||||||| ||||| ||||||| |||||| ||||||| ||||| | ||| ||||||||||||| |||||||||| | ||||| | |
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| T |
42864403 |
aataacacgatttatcaccactaaggtcaagatttctacgaattgatacccaaaacggacacttttcgacaagggacaacattaagaccaagttcgagtg |
42864304 |
T |
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| Q |
113 |
gtgatggaacaagcacacgccatctctcgaagatgggagcagagtcatttaagtcctacaatttatttgagtcagaaaa |
191 |
Q |
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||| || ||||| ||||| |||||||| ||||||| ||| ||| ||||||||||||||||||||||||||| |||||| |
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| T |
42864303 |
gtggtgaaacaaacacacaccatctcttaaagatggaagctgagccatttaagtcctacaatttatttgagttagaaaa |
42864225 |
T |
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