View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125_high_17 (Length: 243)
Name: NF3125_high_17
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 4745582 - 4745358
Alignment:
| Q |
4 |
gatacatgaacgaacaccagtaataacttaagaaaatagaaataatcgaatataactatatgtgtcattgttgtgcgtcggtgctacataggtaaaatgt |
103 |
Q |
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| T |
4745582 |
gatacatgaacgaacaccagtaataacttaagaaaatagaagtaatcgaatataactatatgtgtcattgttgtgcgtcggtgctacataggtaaaatgt |
4745483 |
T |
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| Q |
104 |
aatttgtgctcctcaccatatttcatgcacgaatacccatctaaggttcataatgtgctgctgtccatccagtagatatataatcagaagagatatggnn |
203 |
Q |
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| T |
4745482 |
aatttgtgctcctcaccatatttcatgcacgaatacccatctaaggttcataatgtgctgctgtccatccagtagatatataatcagaagagatatgg-a |
4745384 |
T |
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| Q |
204 |
nnnnnttatatggctgaaactattat |
229 |
Q |
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||||||||||||||||||||| |
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| T |
4745383 |
aaaaattatatggctgaaactattat |
4745358 |
T |
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Back To:
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 8923459 - 8923417
Alignment:
| Q |
24 |
taataacttaagaaaatagaaataatcgaatataactatatgt |
66 |
Q |
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| T |
8923459 |
taataatttaagaaaatagaaataattgaatgtaactatatgt |
8923417 |
T |
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