View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125_high_2 (Length: 762)
Name: NF3125_high_2
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 268 - 746
Target Start/End: Complemental strand, 3810919 - 3810440
Alignment:
| Q |
268 |
cttgattcttgaagcgcataaatcaaattggagtaacacttctgcaannnnnnnaaggtgaaaacaatatcattaataatgaaagtagcaaggattaaat |
367 |
Q |
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| T |
3810919 |
cttgattcttgaagcgtataaatcaaattggagtaacacttctgcaatttttttaaggtgaaaacaatatcattaataatgaaagtagcaaggattaaat |
3810820 |
T |
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| Q |
368 |
cctaagaacaacaaaatcccttaaaaatgacaaactagctctataaagttcgaaactaggnnnnnnnnn-ggtgaacaaagcaagcacaaaacacttgca |
466 |
Q |
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| T |
3810819 |
cctaagaacaacaaaatcccttaaaaatgacaaactagctctataaagttcgaaactaggaaaaaaaaaaggtgaacaaagcaagcacaaaacacttgca |
3810720 |
T |
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| Q |
467 |
ttgcattctcattgtaatcatgctaatgatgcattaaaactttgaagataatctgtgacttcttgaatcagctcagaatcacaacttaattgagtaggta |
566 |
Q |
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| T |
3810719 |
ttgcattctcattgtaatcatgctaatgatgcattaaaactttgaagataatatgtgacttcttgaatcagttcagaatcacaacttaattgagtaggta |
3810620 |
T |
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| Q |
567 |
tcccatcttggttatatagcatatctttcttcttgtgaggagttttgtacctgtttgatcccttattcttcattatttcaaccatgcatgtttgtagagt |
666 |
Q |
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| T |
3810619 |
tcccatcttggttatatagcatatctttcttcttgtgaggagttttgtacctgtttgatcccttattcttcattatttcaaccatgcatgtttgtagagt |
3810520 |
T |
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| Q |
667 |
ataaaattttttatcggattgtacacatgaatattcatcaaatgctttctgaactgcatgaataagatcatcaattgact |
746 |
Q |
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| T |
3810519 |
ataaatttttttatcggattgtacacatgaatattcatcgaatgctttctgaactgcatgaataagatcatcaattgact |
3810440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 3811170 - 3810982
Alignment:
| Q |
17 |
ctgtgaagcgtgaggttatgcatgtgctgaagatgtgtttcaatggaatatagctcattaatgtaattttcatggatattgataacttcaaccgataaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3811170 |
ctgtgaagcgtgaggttatgcatgtgctgaagatgtgtttcaatggaatatagctcattaatgtaattttcatggatattgataacttcaaccgataaca |
3811071 |
T |
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| Q |
117 |
aacccttttaagagtaatgaatttgtggttaatcgtttaatttattgtctttattttctttttaagggtacctgttatgttccacattc |
205 |
Q |
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| T |
3811070 |
aacccttttaagagtaatgaatttgtggttaatcgtttaatttattgtttttattttctttttaagggtacctgttatgttccacattc |
3810982 |
T |
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