View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3125_high_27 (Length: 212)

Name: NF3125_high_27
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3125_high_27
NF3125_high_27
[»] chr6 (14 HSPs)
chr6 (57-212)||(27587663-27587816)
chr6 (83-212)||(26061277-26061406)
chr6 (83-212)||(26081247-26081376)
chr6 (109-212)||(26808047-26808150)
chr6 (100-212)||(25488029-25488141)
chr6 (107-187)||(27599556-27599636)
chr6 (83-175)||(25514535-25514628)
chr6 (4-71)||(27702180-27702247)
chr6 (83-175)||(26146695-26146788)
chr6 (100-175)||(25986852-25986927)
chr6 (93-146)||(26910413-26910466)
chr6 (164-212)||(27659641-27659689)
chr6 (83-132)||(25548562-25548611)
chr6 (109-146)||(27584925-27584962)
[»] chr2 (1 HSPs)
chr2 (4-198)||(17988679-17988865)
[»] chr4 (1 HSPs)
chr4 (85-143)||(5083845-5083903)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 1e-64; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 57 - 212
Target Start/End: Original strand, 27587663 - 27587816
Alignment:
Q  57 tacaagcacgtaaaacatagaaatttattatccaaggttggcatccagaatttacatgtacttctacaatggtattgattctacaagctaatccttgctt 156  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  27587663 tacaagcaagtaaaacatagaaatttattatccaaggttgccatccagaatttacatgtacttctacat--gtattgattctacaagctaatccttgctt 27587760  T
Q  157 gtaaacgtacagtaatgaaagcatcaaattcaaacaatatctgcagcagaaacatc 212  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27587761 gtaaacatacagtaatgaaagcatcaaattcaaacaatatctgcagcacaaacatc 27587816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 26061406 - 26061277
Alignment:
Q  83 attatccaaggttggcatccagaatttacatgtacttctacaatggtattgattctacaagctaatccttgcttgtaaacgtacagtaatgaaagcatca 182  Q
    |||||||||||||||| |||| |||||||||||||||||| |||||| || |||||| || ||||| | ||| | |||| ||||||||||||||  |||     
T  26061406 attatccaaggttggcctccataatttacatgtacttctaaaatggtgttcattctataatctaatgcatgcatctaaatgtacagtaatgaaataatcg 26061307  T
Q  183 aattcaaacaatatctgcagcagaaacatc 212  Q
    |||||||||||||| ||||||| |||||||    
T  26061306 aattcaaacaatatatgcagcacaaacatc 26061277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 26081376 - 26081247
Alignment:
Q  83 attatccaaggttggcatccagaatttacatgtacttctacaatggtattgattctacaagctaatccttgcttgtaaacgtacagtaatgaaagcatca 182  Q
    |||||||||||||||| |||| |||||||||||||||||| |||||| || |||||| || ||||| | ||| | |||| ||||||||||||||  |||     
T  26081376 attatccaaggttggcctccataatttacatgtacttctaaaatggtgttcattctataatctaatgcatgcatctaaatgtacagtaatgaaataatcg 26081277  T
Q  183 aattcaaacaatatctgcagcagaaacatc 212  Q
    |||||||||||||| ||||||| |||||||    
T  26081276 aattcaaacaatatatgcagcacaaacatc 26081247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 26808150 - 26808047
Alignment:
Q  109 tacatgtacttctacaatggtattgattctacaagctaatccttgcttgtaaacgtacagtaatgaaagcatcaaattcaaacaatatctgcagcagaaa 208  Q
    ||||||||||||||| ||| |||| ||||||||||||||| | || ||||||||||||| |||| ||| | | |||||||||||||||||||| || |||    
T  26808150 tacatgtacttctaccatgctattcattctacaagctaatgcatgtttgtaaacgtacattaattaaatcgtaaaattcaaacaatatctgcaacacaaa 26808051  T
Q  209 catc 212  Q
    ||||    
T  26808050 catc 26808047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 25488141 - 25488029
Alignment:
Q  100 tccagaatttacatgtacttctacaatggtattgattctacaagctaatccttgcttgtaaacgtacagtaatgaaagcatcaaattcaaacaatatctg 199  Q
    |||| |||||||||||||||||| |||||| || |||||| || ||||| | ||| | |||| ||||||||||||||  ||| |||||||||||||| ||    
T  25488141 tccataatttacatgtacttctaaaatggtgttcattctataatctaatgcatgcatctaaatgtacagtaatgaaataatcgaattcaaacaatatttg 25488042  T
Q  200 cagcagaaacatc 212  Q
    ||||| |||||||    
T  25488041 cagcacaaacatc 25488029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 27599556 - 27599636
Alignment:
Q  107 tttacatgtacttctacaatggtattgattctacaagctaatccttgcttgtaaacgtacagtaatgaaagcatcaaattc 187  Q
    |||||||||||||||||||||||||| |||| |||| ||| | | | ||||||||| ||||||||||||||||||||||||    
T  27599556 tttacatgtacttctacaatggtattaattccacaacctattgcattcttgtaaacctacagtaatgaaagcatcaaattc 27599636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 25514628 - 25514535
Alignment:
Q  83 attatccaaggttggcatcca-gaatttacatgtacttctacaatggtattgattctacaagctaatccttgcttgtaaacgtacagtaatgaa 175  Q
    ||||||| |||||||| |||| ||||||||||||||||||| ||||||||| |||||| || ||||| | ||| |  |||||||||||||||||    
T  25514628 attatccgaggttggcctccatgaatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaa 25514535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 27702180 - 27702247
Alignment:
Q  4 aaaaaagttagcaacatcaatgttcctgatatttacttttatcagtacatatttacaagcacgtaaaa 71  Q
    ||||||| | ||||||||||||||||||| |||| ||||| |||| ||||||||||||||| ||||||    
T  27702180 aaaaaaggttgcaacatcaatgttcctgaaatttgcttttttcaggacatatttacaagcaggtaaaa 27702247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 26146788 - 26146695
Alignment:
Q  83 attatccaaggttggcatcca-gaatttacatgtacttctacaatggtattgattctacaagctaatccttgcttgtaaacgtacagtaatgaa 175  Q
    ||||||| |||||||| |||| ||||||||||||||||||| ||||||||| |||||| || ||||| | ||  |  |||||||||||||||||    
T  26146788 attatccgaggttggcctccatgaatttacatgtacttctaaaatggtattcattctataatctaatgcatgtctccaaacgtacagtaatgaa 26146695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 25986927 - 25986852
Alignment:
Q  100 tccagaatttacatgtacttctacaatggtattgattctacaagctaatccttgcttgtaaacgtacagtaatgaa 175  Q
    |||| |||||||||||||||||| ||||||||| |||||| || ||||| | ||| |  |||||||||||||||||    
T  25986927 tccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaa 25986852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 26910466 - 26910413
Alignment:
Q  93 gttggcatccagaatttacatgtacttctacaatggtattgattctacaagcta 146  Q
    |||||| |||||  ||||||||||||||||||| | ||||||||||||||||||    
T  26910466 gttggcctccagtttttacatgtacttctacaacgttattgattctacaagcta 26910413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 27659641 - 27659689
Alignment:
Q  164 tacagtaatgaaagcatcaaattcaaacaatatctgcagcagaaacatc 212  Q
    |||| ||||||||| ||||||||||||||||||||| |||| |||||||    
T  27659641 tacaataatgaaagaatcaaattcaaacaatatctgtagcacaaacatc 27659689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 25548611 - 25548562
Alignment:
Q  83 attatccaaggttggcatccagaatttacatgtacttctacaatggtatt 132  Q
    ||||||| |||||||| |||| | |||||||||||||||| |||||||||    
T  25548611 attatccgaggttggcctccatattttacatgtacttctaaaatggtatt 25548562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 27584925 - 27584962
Alignment:
Q  109 tacatgtacttctacaatggtattgattctacaagcta 146  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  27584925 tacaagtacttctacaatggtattgattttacaagcta 27584962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 17988679 - 17988865
Alignment:
Q  4 aaaaaagttagcaacatcaatgttcctgatatttacttttatcagtacatatttacaagcacgtaaaacatagaaatttattatccaaggttggcatcca 103  Q
    |||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||| |||||| |  ||||  ||||||||| |||||| ||||    
T  17988679 aaaaaagttagcaacatcaaagttcctgatatttggttttatcagtacatatttacaagcacataaaacgttcaaatacattatccaaagttggcctcca 17988778  T
Q  104 gaatttacatgtacttctacaatggtattgattctacaagctaatccttgcttgtaaacgtacagtaatgaaagcatcaaattcaaacaatatct 198  Q
    ||||||||||| ||||||||||||||||||| || |||||||||||| |||||||        ||||||||||||||||||||||||||||||||    
T  17988779 gaatttacatgaacttctacaatggtattgactccacaagctaatccatgcttgt--------agtaatgaaagcatcaaattcaaacaatatct 17988865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 5083903 - 5083845
Alignment:
Q  85 tatccaaggttggcatccagaatttacatgtacttctacaatggtattgattctacaag 143  Q
    ||||||||| || ||||| ||||||||| ||| ||||||||||||||||||| ||||||    
T  5083903 tatccaaggatgacatcctgaatttacaagtatttctacaatggtattgattttacaag 5083845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University