View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3125_high_3 (Length: 590)
Name: NF3125_high_3
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 18028510 - 18028903
Alignment:
| Q |
17 |
tttgatttcttctattttgttcagcaggtaattaaatcatttatttctctatgatttatgaatgtttcattttaatattgattttatggctcaatggcta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18028510 |
tttgatttcttctattttgttcagcaggtaattaaatcatttatttctctatgatttatgaatgtttcattttaatattgattttatggctcaatggcta |
18028609 |
T |
|
| Q |
117 |
cataaagaaaaatggggatcaagaatttaacaaattccagattcaaacatgcacgtttactattagtgtttatagctttcaccaactgagctacgcacgc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
18028610 |
cataaagaaaaatggggatcaagaatttaacaaattccagattcaaacatgcacgtttactattagtgttcatagctttcaccaactgagctacacacgc |
18028709 |
T |
|
| Q |
217 |
gagactaatttacttgttgtgttgtttgtaaatgtagtggccaggagcatactgtgacacaaagcaaagctgctgttatccgaaaaccggaaaaccgacg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18028710 |
gagactaatttacttgttgtgttgtttgtaaatgtagtggccaggagcatactgtgacacaaagcagagctgctgttatccgaaaaccggaaaaccgacg |
18028809 |
T |
|
| Q |
317 |
gcagattttggcattcatggactgtggcctaactacaatgatggatcatggccctcaaactgtgatcctgatagtacctttgataaatctcagg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18028810 |
gcagattttggcattcatggactgtggcctaactacaacgatggatcatggccctcaaactgtgatccagatagtacctttgataaatctcagg |
18028903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 252 - 379
Target Start/End: Original strand, 18034551 - 18034678
Alignment:
| Q |
252 |
agtggccaggagcatactgtgacacaaagcaaagctgctgttatccgaaaaccggaaaaccgacggcagattttggcattcatggactgtggcctaacta |
351 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||| |||||| ||||||||| |
|
|
| T |
18034551 |
agtggccaggagcaatctgtgactcaaagcagagctgctgttttccgaaaaccggaaaaccgacagcagattttaccattgctggacttaggcctaactt |
18034650 |
T |
|
| Q |
352 |
caatgatggatcatggccctcaaactgt |
379 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
18034651 |
caatgatggatcatctccctcaaactgt |
18034678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 508 - 578
Target Start/End: Original strand, 18029001 - 18029072
Alignment:
| Q |
508 |
caactgaaaaactcatcaat-agatatatttaattttatacagatctcagacctaatgaagaacatggagaa |
578 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18029001 |
caactgaaaaactaatcaatgagttatatttaattttatatagatctcagacctaatgaagaacatggagaa |
18029072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 18052266 - 18052339
Alignment:
| Q |
252 |
agtggccaggagcatactgtgacacaaagcaaagctgctgttatccgaaaaccggaaaaccgacggcagatttt |
325 |
Q |
| |
|
||||||||||| ||||||||||| |||| | | |||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
18052266 |
agtggccaggatcatactgtgactcaaaactaggctgctgttatccgaaaaccggtaaaccggcggcagatttt |
18052339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 18046986 - 18047029
Alignment:
| Q |
17 |
tttgatttcttctattttgttcagcaggtaattaaatcatttat |
60 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18046986 |
tttgatttcttctattttattcagcaggtaattaaatcatttat |
18047029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 18034373 - 18034412
Alignment:
| Q |
17 |
tttgatttcttctattttgttcagcaggtaattaaatcat |
56 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18034373 |
tttgatttcttctattttattcagcaggtaattaaatcat |
18034412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 18047112 - 18047159
Alignment:
| Q |
252 |
agtggccaggagcatactgtgacacaaagcaaagctgctgttatccga |
299 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||||||||||| |
|
|
| T |
18047112 |
agtggccaggagcatactgtgactcaaaccagagctgctgttatccga |
18047159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University