View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125_high_8 (Length: 377)
Name: NF3125_high_8
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 26553008 - 26553363
Alignment:
| Q |
16 |
ttctttgcagatgtatttacgtacttgatttggtaaaaggacgataaataacaaaaatacagtgcttggattaggaagggaaaaatcaatnnnnnnntgc |
115 |
Q |
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| T |
26553008 |
ttctttgcagatgtatttac----ttgatttggtaaaaggacgataaataacaaaaatacagtgcttggattaggaagggaaaaatcaataaaaaaatgc |
26553103 |
T |
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| Q |
116 |
tgccaaccataagaattgccccctacaagtataagaattgtcaattttactaattg-----ctctgacagatatgcgaccaaccatcagattcaaagtat |
210 |
Q |
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| T |
26553104 |
tgccaaccataagaattgccccctacaagtataagaattgtcaattttactaattgaaatactctgacagatatgcggccaaccatcagattcaaagtat |
26553203 |
T |
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| Q |
211 |
aataataaaccttaaaaatttaaagccatacgaacttcatatacatcacgaatcgctttatatgattatctgtaataacaatttaaatcattcggtaaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26553204 |
aataataaaccttaaaaatttaaagccatacgaacttcatatacatcacgaatcgctttatatgattatctgtaataacaatttaaatcattcggtaaaa |
26553303 |
T |
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| Q |
311 |
ataattaataacaatctaaatattcacaattattttttacttaaatgcagtcctatgcta |
370 |
Q |
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| T |
26553304 |
ataattaataacaatctaaatattcacaattattttttacttaaatgcagtcctatgcta |
26553363 |
T |
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