View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125_high_9 (Length: 376)
Name: NF3125_high_9
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 36767958 - 36767619
Alignment:
| Q |
11 |
cagagaaaccataagacctgttaataaccacaatcgagcttccatactccaaagttcatctagaaggagaaacgagagttttgagggactctcccataca |
110 |
Q |
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| T |
36767958 |
cagagaaaccataagacctgttaataaccacaatcgagcttccatactccaaagttcatctagaaggagaaacgagagttttgagggactctcccataca |
36767859 |
T |
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| Q |
111 |
caaaacaccttcacaagagggtaactctgatgaaggctcgaaacgacgagatggtacaccttctcgacgtcaaaacaacatttttcacacaccacttcag |
210 |
Q |
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| T |
36767858 |
caaaacaccttcacaagagggtaactctgatgaaggctcgaaacgatgagatggtacaccttctcgacgtcaaaacaacataagtcacacaccacttcag |
36767759 |
T |
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| Q |
211 |
cggtgtaaaattcgaagacctacaccatattgcgtaatcgagatggagacacaattacacaaataagaaaactcaaagaaagagtagtagaggcccataa |
310 |
Q |
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| T |
36767758 |
cggtgtaaaattcgaagacctacaccatattgcgtaatcaagatggagac--------acaaataagaaaactcaaagaaagagtagtagaggcccataa |
36767667 |
T |
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| Q |
311 |
aaataagaggaatcaacctcgtatgcctagcaaagaaaacaactatga |
358 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36767666 |
aaataagaggaatcaacctcgtatgcctaacaaagaaaacaactatga |
36767619 |
T |
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