View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125_low_12 (Length: 296)
Name: NF3125_low_12
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 2577478 - 2577206
Alignment:
| Q |
1 |
gccatggatgtgagtactggatacgtgagaagaaaagaaagtgaagcgtatgaaattactgtgtattttaaatnnnnnnnntgttttatttaattttaaa |
100 |
Q |
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| T |
2577478 |
gccatggatgtgagtactggacacgtgagaagaaaagaaagtgaagcgtatgaaattactgtttattttaa---caaaaaatgttttatttaattttaaa |
2577382 |
T |
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| Q |
101 |
tctaagtcattgaattcttttttgccacatgtcatttattcaaaaccctaaataaactaaatggagcatgttgactcgtatccatgaacacctttagtta |
200 |
Q |
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| T |
2577381 |
ttcgagtcattgaatttttttttaccacgtgtcatttatccaaaaccttaaatgaattaaatggagcatattgactcgtatccatgaacatctttagtta |
2577282 |
T |
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| Q |
201 |
aggtatctttgaatttttgggtataaaacggtaataaaatttgtaatctccaatttttggtatttcctatggggat |
276 |
Q |
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| T |
2577281 |
aggtatctttgaatttttgggtataaaacggtaataaaatttgtaatctccaatttttggtatttcctatggggat |
2577206 |
T |
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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 33669564 - 33669627
Alignment:
| Q |
108 |
cattgaattcttttttgccacatgtcatttattcaaaaccctaaataaactaaatggagcatgt |
171 |
Q |
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| T |
33669564 |
cattgaattcttttttgccacatgtcattcatttaagaccctaaatgaactaaatggagcatgt |
33669627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 10257815 - 10257743
Alignment:
| Q |
82 |
tgttttatttaattttaaatctaagtcattgaattcttttttgccacatgtcatttattcaaaaccctaaata |
154 |
Q |
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| T |
10257815 |
tgttttgtttatttttaaatctgaaccatttaattattttttgccacatgtcattcatctaagaccctaaata |
10257743 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 10031842 - 10031763
Alignment:
| Q |
84 |
ttttatttaattttaaatctaagtcattgaattcttttttgccacatgtcatttattcaaaaccctaaataaactaaatg |
163 |
Q |
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| T |
10031842 |
ttttgtttatttttaaatctaaatcgttgaatttttttttgccacatatcattcatccaaaacgttaaatagactaaatg |
10031763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 2515587 - 2515673
Alignment:
| Q |
82 |
tgttttatttaattttaaatctaagtcattgaattcttttttgccacatgtcatttattcaaaaccctaaataaactaaatggagca |
168 |
Q |
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| T |
2515587 |
tgttttatttatttttaaatctcaaccattgaatctatttttcccatatgtcattcatccaagaccctaaattaattaaatggagca |
2515673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 22536878 - 22536937
Alignment:
| Q |
93 |
attttaaatctaagtcattgaattcttttttgccacatgtcatttattcaaaaccctaaat |
153 |
Q |
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| T |
22536878 |
attttaaatctgaatcattgaatt-ttttttaccacatgtcattcatccaacaccctaaat |
22536937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 33029540 - 33029601
Alignment:
| Q |
108 |
cattgaattcttttttgccacatgtcatttattcaaaaccctaaataaactaaatggagcat |
169 |
Q |
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| T |
33029540 |
cattgaatttgtttttgccacatgtctttcatccaataccctaaatgaactaaatggagcat |
33029601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 169
Target Start/End: Original strand, 49618105 - 49618185
Alignment:
| Q |
89 |
tttaattttaaatctaagtcattgaattcttttttgccacatgtcatttattcaaaaccctaaataaactaaatggagcat |
169 |
Q |
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| T |
49618105 |
tttaatttaaaatctcagtcgttggatgtttgtttgccacatgtctttaatccaaacccctaaatggactaaatggagcat |
49618185 |
T |
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