View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125_low_21 (Length: 241)
Name: NF3125_low_21
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_low_21 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 55980278 - 55980052
Alignment:
| Q |
19 |
atttcgacccaaaaccgaagctgcaaagtcgatcatatcctcaatagaccccacacannnnnnngtctcacctctagcaggaactctctcacattcaccc |
118 |
Q |
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| T |
55980278 |
atttcgacccaaaaccgaagctgcaaagtcgatcatatcctcaatagaccccacacatttttttgtctcacctctagcaggaactctctcacattcaccc |
55980179 |
T |
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| Q |
119 |
aatgaatctctcatcatcttttccattgaaccattatccgaagcattaaata----accccttcatctcatcaatctttgaagtagaaaaaggtaatttc |
214 |
Q |
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| T |
55980178 |
aatgaatctctcatcatcttttccattgaatcattatccgaagcattaaataacccaccccttcatctcatcaatctttgaagtagaaaaaggtaatttc |
55980079 |
T |
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| Q |
215 |
gcaagaatactccggggtaaaaacgac |
241 |
Q |
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|||||||||||| |||||||||||||| |
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| T |
55980078 |
gcaagaatactctggggtaaaaacgac |
55980052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 14866371 - 14866149
Alignment:
| Q |
19 |
atttcgacccaaaaccgaagctgcaaagtcgatcatatcctcaatagaccccacacannnnnnngtctcacctctagcaggaactctctcacattcaccc |
118 |
Q |
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| T |
14866371 |
atttcgacccaaaaccgaagttgcaaagtcgatcatatcctcaatagacccaacacatctttttgtctcacctttagccggaactctctcacaatcaccc |
14866272 |
T |
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| Q |
119 |
aatgaatctctcatcatcttttccattgaaccattatccgaagcattaaataaccccttcatctcatcaatctttgaagtagaaaaaggtaatttcgcaa |
218 |
Q |
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| T |
14866271 |
aatgaatccctcatcatcttttccattgaaccattatccgaagccttgaatagccccttcatctcatcaatcttggatgtagaaaacggtaatttcgcaa |
14866172 |
T |
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| Q |
219 |
gaatactccggggtaaaaacgac |
241 |
Q |
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| T |
14866171 |
gaatactccggggtaaaaacgac |
14866149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 14248872 - 14248765
Alignment:
| Q |
104 |
ctctcacattcacccaatgaatctctcatcatcttttccattgaaccattatccgaagcattaaataaccccttcatctcatcaatctttgaagtagaaa |
203 |
Q |
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| T |
14248872 |
ctctcacactctcctagtgaacctctcatcattttctccattggaccataatccaaaaccatgaataaccatttcatttcatcaatctttgaactagaaa |
14248773 |
T |
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| Q |
204 |
aaggtaat |
211 |
Q |
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| T |
14248772 |
acggtaat |
14248765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 14234845 - 14234921
Alignment:
| Q |
128 |
ctcatcatcttttccattgaaccattatccgaagcattaaataaccccttcatctcatcaatctttgaagtagaaaa |
204 |
Q |
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| T |
14234845 |
ctcatcattttctctattgaaccattatccgaagccttgcataatggtttcatttcatcgatctttgaagtagaaaa |
14234921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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