View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125_low_22 (Length: 236)
Name: NF3125_low_22
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 44307516 - 44307375
Alignment:
| Q |
15 |
aaaatacaatacacaaatgtctcatacaatgtcataataagtacaaactgcagcgtacaaagtgcatgatatcaaaaccataatttgtgtgcaaataaca |
114 |
Q |
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| T |
44307516 |
aaaatacaatacacaaatgtctcatacaatgtcataataagtacaaactgcagcgtacaaagtgtgtgatatcaaaaccataatttgtgtacaaataaca |
44307417 |
T |
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| Q |
115 |
tgacatttagcaacatataatactaatatatgagacatatcaac |
158 |
Q |
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| T |
44307416 |
tgacatttagcaac--ataatactaatatatgagacatatcaac |
44307375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 44314596 - 44314493
Alignment:
| Q |
12 |
atgaaaatacaatacacaaatgtctcatacaatgtcataataa-gtacaaactgcagcgtacaaagtgcatgatatcaaaaccataatttgtgtgcaaat |
110 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||| |
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| T |
44314596 |
atgaaaatacaatacacgcatgtctcatataatgtcataataaagtacaaactgcagcgtaaaaagtacataatatcaaaaccataatttgtgtacaaat |
44314497 |
T |
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| Q |
111 |
aaca |
114 |
Q |
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|||| |
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| T |
44314496 |
aaca |
44314493 |
T |
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