View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125_low_23 (Length: 236)
Name: NF3125_low_23
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 15913035 - 15913238
Alignment:
| Q |
16 |
tatacttgaagtgtagcaaatcagtgaataatgatcctgagtacgtcgataccactccctgcatcagctcggactccaaaagccatgtttacgcttattc |
115 |
Q |
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| T |
15913035 |
tatacttgaagtgtagcaaatcagtgaatgatgatcctgagtacgtggataccgctccctgcatcagctcggactccaaaagccatgtttacgcttatgc |
15913134 |
T |
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| Q |
116 |
cgggggatacttgacagttgggaaattaaaagattattgcaaagtgatgcttgtagctatgtcatcctcagattttcatagtgtcagtgttagagaaggt |
215 |
Q |
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| T |
15913135 |
cgggggatacttgacagttgggaaattaaaagattattgcaaagtgatgcttgtagctatgtcatcctcagattttcatagtgtcagtgttagagaaggt |
15913234 |
T |
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| Q |
216 |
gtac |
219 |
Q |
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|||| |
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| T |
15913235 |
gtac |
15913238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 9358955 - 9358866
Alignment:
| Q |
130 |
cagttgggaaattaaaagattattgcaaagtgatgcttgtagctatgtcatcctcagattttcatagtgtcagtgttagagaaggtgtac |
219 |
Q |
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| T |
9358955 |
cagttgggagattaaaagattattgccaagtgaagcttgttgctatgtcatcttcagattttcctaatgtcagagtcagagaaggtgtac |
9358866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 9335406 - 9335311
Alignment:
| Q |
16 |
tatacttgaagtgtagcaaatcagtgaataatgatcctgagtacgtcgataccactccctgcatcagctcggactccaaaagccatgtttacgctt |
111 |
Q |
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| T |
9335406 |
tatacttgaagtgtagcaaacaagtgaatgatgatactgagtatgtggatacagctccctgcatcagctccgactccaaaagctatctttatgctt |
9335311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 9245319 - 9245414
Alignment:
| Q |
16 |
tatacttgaagtgtagcaaatcagtgaataatgatcctgagtacgtcgataccactccctgcatcagctcggactccaaaagccatgtttacgctt |
111 |
Q |
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|||||||||| ||||||||| |||||||| ||||||||||||| || ||||| ||||||| |||| ||| |||||||||||| || |||| |||| |
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| T |
9245319 |
tatacttgaaatgtagcaaagcagtgaatgatgatcctgagtatgtggatacagctccctgtatcaactccgactccaaaagctatctttatgctt |
9245414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 9335235 - 9335149
Alignment:
| Q |
130 |
cagttgggaaattaaaagattattgcaaagtgatgcttgtagctatgtcatcctcagattttcatagtgtcagtgttagagaaggtgtac |
219 |
Q |
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| T |
9335235 |
cagttgggagattaaaagattattgccaagtgaagcttgttgctatgtcatctt---attttcctaatgtcagagtcagagaaggtgtac |
9335149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 9245456 - 9245525
Alignment:
| Q |
135 |
gggaaattaaaagattattgcaaagtgatgcttgtagctatgtcatcctcagattttcatagtgtcagtg |
204 |
Q |
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| T |
9245456 |
gggagattaaaagactattgccaagtgaagcttgttgctatgtcatcttcagattttcctagtgacagtg |
9245525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 9359132 - 9359037
Alignment:
| Q |
16 |
tatacttgaagtgtagcaaatcagtgaataatgatcctgagtacgtcgataccactccctgcatcagctcggactccaaaagccatgtttacgctt |
111 |
Q |
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|||||||||| ||||||||| ||||||| ||||||||||||| || ||||| ||||||| |||| ||| |||||| ||||| || |||| |||| |
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| T |
9359132 |
tatacttgaattgtagcaaacaagtgaatgatgatcctgagtatgtggatacagctccctgtatcaactccgactccgaaagctatctttatgctt |
9359037 |
T |
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