View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3125_low_24 (Length: 234)
Name: NF3125_low_24
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5986663 - 5986881
Alignment:
| Q |
1 |
taaaaataaaacaaaagattttgtgaggatgaaaatatctgnnnnnnnagcaatatcttgttttatttggttaggactaaaattaaaatttgttatattt |
100 |
Q |
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| T |
5986663 |
taaaaataaaacaaaagattttgtgaggatgaaaatatct-tttttttagcaatatcttgttttatttgtttaggactaaaattaaaatttgttatattt |
5986761 |
T |
|
| Q |
101 |
ttagagaagaaaaacttatgtaacgtgtttgtgttagagagggacatagaactcaaaaaattcaacgtattaaatgagatatcattttcttagtttgctt |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5986762 |
ttagagaagaaaaacttatgtaacgtgattgtgttagagagggacatagaactcaaaaaattcaacgtattaaatgagatatcattttcttagtttgctt |
5986861 |
T |
|
| Q |
201 |
gcatacagggaacataaaac |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
5986862 |
gcatacagggaacataaaac |
5986881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 38834064 - 38834110
Alignment:
| Q |
73 |
aggactaaaattaaaatttgttatatttttagagaagaaaaacttat |
119 |
Q |
| |
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|||| ||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
38834064 |
aggattaaaattaaaattcgttatatttttagggaagaaaaacttat |
38834110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 38852026 - 38851975
Alignment:
| Q |
73 |
aggactaaaattaaaatttgttatatttttagagaagaaaaacttatgtaac |
124 |
Q |
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|
| T |
38852026 |
aggattaaaatcaaaatttattatatttttagagacgaaaaacttatttaac |
38851975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 20140888 - 20140824
Alignment:
| Q |
60 |
gttttatttggttaggactaaaattaaaatttgttatatttttagagaagaaaaacttatgtaac |
124 |
Q |
| |
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||||||||| | |||||||||||||||||||||||||||| |||||| |||| ||||| |||| |
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|
| T |
20140888 |
gttttattttataaggactaaaattaaaatttgttatatttatagagacaaaaatcttatttaac |
20140824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 35652126 - 35652174
Alignment:
| Q |
76 |
actaaaattaaaatttgttatatttttagagaagaaaaacttatgtaac |
124 |
Q |
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||||||||||||||||| ||||||| ||| || ||||||||||| |||| |
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|
| T |
35652126 |
actaaaattaaaatttgatatatttatagggatgaaaaacttatttaac |
35652174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 14584979 - 14584929
Alignment:
| Q |
74 |
ggactaaaattaaaatttgttatatttttagagaagaaaaacttatgtaac |
124 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| |||||| |||| |||| |
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|
| T |
14584979 |
ggactaaaatcaaaatttattatatttttagagacgaaaaaattatttaac |
14584929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 7630654 - 7630699
Alignment:
| Q |
74 |
ggactaaaattaaaatttgttatatttttagagaagaaaaacttat |
119 |
Q |
| |
|
|||||||||| |||||||| ||||||| |||||| ||||||||||| |
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| T |
7630654 |
ggactaaaatcaaaatttgatatatttatagagacgaaaaacttat |
7630699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 28260028 - 28260077
Alignment:
| Q |
75 |
gactaaaattaaaatttgttatatttttagagaagaaaaacttatgtaac |
124 |
Q |
| |
|
||||||||| |||||||| ||||||||||| || ||||||||||| |||| |
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|
| T |
28260028 |
gactaaaatcaaaatttgctatatttttagggacgaaaaacttatttaac |
28260077 |
T |
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