View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125_low_26 (Length: 228)
Name: NF3125_low_26
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 86 - 211
Target Start/End: Original strand, 3538731 - 3538856
Alignment:
| Q |
86 |
aacaatgcgaataacaacaagatggatccccacacaaagttccttgtcatgaaaggttaaaatgaattgaaatttttatattgtttgctttttatggctt |
185 |
Q |
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| T |
3538731 |
aacaatgcgaataacaacaagatggatccccacacaaagttccttgtcatgaaaggttaaaatgaattgaaatttttatattgtttgctttttatggctt |
3538830 |
T |
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| Q |
186 |
tactttgaccttttgagggtttgggt |
211 |
Q |
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| T |
3538831 |
tactttgaccttttgagggtttgggt |
3538856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 3538510 - 3538628
Alignment:
| Q |
14 |
catcatcaacgatgaagctgcttgctttaaatataaagcgcagaacaaccacccagatttccgaccaaggtaaacaatgcgaataacaacaagatggatc |
113 |
Q |
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| T |
3538510 |
catcatcaacgatgaagctgcttgctttaaatataaagctcagaacaaccacccagatttccgaccaaggtgaacaatgcgaataacaacaagatggatc |
3538609 |
T |
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| Q |
114 |
cccacacaaagttccttgt |
132 |
Q |
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| T |
3538610 |
cccacacagagttccttgt |
3538628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 3545860 - 3545783
Alignment:
| Q |
132 |
tcatgaaaggttaaaatgaattgaaatttttatattgtttgctttttatggctttactttgaccttttgagggtttgg |
209 |
Q |
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| T |
3545860 |
tcatgaacgattaaaaaaaaatgaaatttgtatgttgtttgcgttttatggctttattttgaccttttgaggatttgg |
3545783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 5272291 - 5272325
Alignment:
| Q |
174 |
tttttatggctttactttgaccttttgagggtttg |
208 |
Q |
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| T |
5272291 |
tttttatggctttactttgaccttttgagggtttg |
5272325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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