View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125_low_5 (Length: 540)
Name: NF3125_low_5
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 188 - 531
Target Start/End: Complemental strand, 45597490 - 45597147
Alignment:
| Q |
188 |
ctaaaatcaagtcaattgatacctattctctccctctagccttatcgatctccgacttctctccaaccaaacacaaatcttctccaccgccttacccgat |
287 |
Q |
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| T |
45597490 |
ctaaaatcaagtcaattgatacctattctctccctctagccttatcgatctccgacttctctctaaccaaacacaaatcttctccaccgccttacccgat |
45597391 |
T |
|
| Q |
288 |
catccaaatctcacccttcaagatgtaattgctactgatggtggtacgattagaagcttccatctccgcaccacctctcccatgtccttcaatgttgtgt |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45597390 |
catccaaatctcacccttcaagatgtaattgctactgatggtggtacgattagaagcttccatctccgcaccacctctcccatgtccttcgatgttgtgt |
45597291 |
T |
|
| Q |
388 |
cgagagcttctccttgatttgcattatattctcacgatgcgaggttcatagcccacgatgcaagttaggcactagctaactctttgatttcttcactcca |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45597290 |
cgagagcttctccttgatttgcattatattctcacgatgcgaggttcatagcccgcgatgcaagttaggcactagctgcctctttgatttcttcactcca |
45597191 |
T |
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| Q |
488 |
tattccatattttctcaccaaaacgtctttaacaactatgccct |
531 |
Q |
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| T |
45597190 |
tattccatattttctcaccaaaacgtctttaacaactatgccct |
45597147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 45597610 - 45597512
Alignment:
| Q |
18 |
ttgtggaaattgaagtcgtatacatactttacaatttataaatctgtggtacattgagttgcccttgcagaatttggttcattgaatttttaatatcat |
116 |
Q |
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| T |
45597610 |
ttgtggaaattgaagtcgtatacatactttacaatttataaacctgtggtatattgagttgcccttgcaaaatctagttcattgaatttttaatatcat |
45597512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 4016582 - 4016446
Alignment:
| Q |
18 |
ttgtggaaattgaagtcgtatacatactttacaatttataaatctgtggtacattgagttgcccttgcagaatttggttcattgaatttttaatatcatg |
117 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
4016582 |
ttgtggaaattgaagtcgtatacatactttacaatc-ataaacctggggtacattaagttgcccttgtaaaatttggttcattgaatttttaatatcatg |
4016484 |
T |
|
| Q |
118 |
gatctttggctataatgtatttgtgcatgggtacacaa |
155 |
Q |
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| T |
4016483 |
gatctatggttataatgcacttgtgtatgggtacacaa |
4016446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 32869381 - 32869320
Alignment:
| Q |
221 |
ctctagccttatcgatctccgacttctctccaaccaaacacaaatcttctccaccgccttac |
282 |
Q |
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| T |
32869381 |
ctctagccttatcattctccgacttctctctaaccaaacacaaaccttctccaccaccttac |
32869320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 29535226 - 29535304
Alignment:
| Q |
247 |
tctccaaccaaacacaaatcttctccaccgccttacccgatcatccaaatctcaccctt----caagatgtaattgcta |
321 |
Q |
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|||| ||||||| ||||| |||||||||| |||||| | ||||||||||||||| |||| |||||||||||||||| |
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| T |
29535226 |
tctctaaccaaatacaaaccttctccaccaccttactcaatcatccaaatctcatccttcgaccaagatgtaattgcta |
29535304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 11853742 - 11853646
Alignment:
| Q |
66 |
gtacattgagttgcccttgcagaatttggttcattgaatttttaatatcatggatctttggcta-taatgtatttgtgcatgggtacacaaatttatc |
162 |
Q |
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| T |
11853742 |
gtacattgaattgctctagcaaaatctggttcattgaatttt-aatactatagatctattgctaataatgcatttgtgtatgggtacacagatttatc |
11853646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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