View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125_low_6 (Length: 494)
Name: NF3125_low_6
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_low_6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 14 - 494
Target Start/End: Complemental strand, 43939884 - 43939404
Alignment:
| Q |
14 |
acctgtggttgaagggttggagaatttcaaagggaaagtaattcattcaactaggtacaaaaatggaaaagagtttaaagatgaacatgttcttgttgtt |
113 |
Q |
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| T |
43939884 |
acctgtggttgaagggttggagaatttcaaagggaaagtaattcattcaactaggtacaaaaatggaaaagagtttaaagatgaacatgttcttgttgtt |
43939785 |
T |
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| Q |
114 |
ggttctggtaattctggtatggagattgctttagatttggctaattttggtgctaaaccttcaatcattgttagaagcccggtattaacaaaagtctatg |
213 |
Q |
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| T |
43939784 |
ggttctggtaattctggtatggagattgctttagatttggctaattttggtgctaaaccttcaatcattgttagaagcccggtattaacaaaattctatg |
43939685 |
T |
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| Q |
214 |
ttccttattctttttctctttaattagatctttactagtttaggctagctaaattatggtatggtatgtgattttgttcgttgatttgagataggattgt |
313 |
Q |
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| T |
43939684 |
ttccttattctttttctctttaattagatctttactagtttaggctagctaaattatggtatggtatgtgattttgatcgttgatttgagataggattgt |
43939585 |
T |
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| Q |
314 |
ttatattacatagccagtttcatagttaactgatcttggccgtagatttaaatcaaacggccaagtcttagagttaccgcgtctaatctaaatccctaaa |
413 |
Q |
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| T |
43939584 |
ttatattacatagccagtttcatagttaactgatcttggccgtagattcaaatcaaacggccaagtctcagagttaccgcgtctaatctaaatccctaaa |
43939485 |
T |
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| Q |
414 |
ttacacttttgaaccctttggttatttttaaattttactttggtcttaaaagggaatgataattctatgattctgatggcc |
494 |
Q |
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| T |
43939484 |
ttacacttttgaaccctttggttatttttaaattttactttggtcttaaaagggaatgataattcaatgattctgatggcc |
43939404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 43927944 - 43927847
Alignment:
| Q |
45 |
gggaaagtaattcattcaactaggtacaaaaatggaaaagagtttaaagatgaacatgttcttgttgttggttctggtaattctggtatggagattgc |
142 |
Q |
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| T |
43927944 |
gggaaagtgattcattcaactgggtttaagaatgggaaagagtttaaagatgaacatgttcttgttgttgggtctgggaattctggtatggaaattgc |
43927847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 15608185 - 15608285
Alignment:
| Q |
49 |
aagtaattcattcaactaggtacaaaaatggaaaagagtttaaagatgaa----catgttcttgttgttggttctggtaattctggtatggagattgctt |
144 |
Q |
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|||| |||||||||||| ||| || |||| |||||||||||||||||| ||||||||| ||||||| ||||| |||||||| ||||| | ||||| |
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| T |
15608185 |
aagtgattcattcaactgggtttaagaatgagaaagagtttaaagatgaattaacatgttctttttgttggatctgggaattctggcatggaaactgctt |
15608284 |
T |
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| Q |
145 |
t |
145 |
Q |
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| T |
15608285 |
t |
15608285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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