View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3125_low_7 (Length: 471)
Name: NF3125_low_7
Description: NF3125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3125_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 9 - 453
Target Start/End: Complemental strand, 41509533 - 41509087
Alignment:
| Q |
9 |
gaagaatatctatatctaatgaatggtgatgtaagagcatatgcaatgaacattgaatcatattaggaaagtagtgatggtatgcaatactgcaatacat |
108 |
Q |
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| T |
41509533 |
gaagaatatctatatctaatgaatggtgatgtaagagcatatgcaatgaacattgaatcatgttaggaaagtagtgatggtatgcaatactacaatgcat |
41509434 |
T |
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| Q |
109 |
ggatatat-cat-----ataggtctagaatcatgtgaataacacgtagcatgcttttaatgatgaccacaaattctcttctaagacgcaaacaaaaaagt |
202 |
Q |
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| T |
41509433 |
ggatatatgcatggagtataggtctagaatcatgtgaatcacacgtagcatgctttttatgatgaccacaaattctcttctaagacgcaaacaaaaaagt |
41509334 |
T |
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| Q |
203 |
gagaaggaagtgacgtgaagattcaattatagtatggcaggagagtcagaatggaaacgactcatgcccacttgtttacctgaataaattcttgcatgac |
302 |
Q |
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| T |
41509333 |
gagaaggaagtgacgtgaagattcaattatagtatggcaggagtcagaaaatggaaacgactcatgcccacttgtttacctgaataaattcttgcatgac |
41509234 |
T |
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| Q |
303 |
cacttccaccacatgtgtcttatgtacggtattaattaaaccgtgttaacttaacatattcaaagtcagtgtatttgtcttagatcttttaggtaatgtt |
402 |
Q |
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| T |
41509233 |
cacatccaccacatgtgtcttatgtacggt----attaaaccgtgttaacttaacatattcaaaatcagtgtatttgtcttagatcttttaggtaatgtt |
41509138 |
T |
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| Q |
403 |
ttagattagagtttttgccaactgaaaaaatgggtttgcgagagaatattc |
453 |
Q |
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| T |
41509137 |
ttagattagagtttttgccaactgaaaaagtgggtttgcgaaagaatattc |
41509087 |
T |
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