View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3126_high_1 (Length: 501)
Name: NF3126_high_1
Description: NF3126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3126_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 9883413 - 9883895
Alignment:
| Q |
1 |
tagcaactgcacaagcacaagaagaacagattaaagtgatgggagaaagagaagaaaagttaaacttttacaaaacttcaaaggaagaaatagataataa |
100 |
Q |
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| T |
9883413 |
tagcaactgcacaagcacaagaagaacagattaaagtgatgggagaaagagaagaaaagttaaacttttacaaaacttcaaaggaagaaatagataataa |
9883512 |
T |
|
| Q |
101 |
attgatggaagtgaagaatgagtatgatcctgaagaaacacaaagtctcgaggagaaacttgctgaaacaagtgctgaaattcaggttcttcaagtgaag |
200 |
Q |
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| T |
9883513 |
attgatggaagtgaagaatgagtatgatcctgaagaaacacaaagtctcgaggcgaaacttgctgaaacaagtgctgaaattctggttcttcaagagaag |
9883612 |
T |
|
| Q |
201 |
ataaaagagtttcgtgagtccgagatggattctattgaggtaataactttggaaatcaaagaagcaacaaagaaactgcaagaaatttctgaagaagaag |
300 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9883613 |
ataaaagagtttcgtgagtctgagatggattctgttgaggtaataactttggaaatcaaagaagcaacaaagaaactgcaagaaatttctgaagaagaag |
9883712 |
T |
|
| Q |
301 |
cttcactgagaaaccttgtggattcccttaagacagaattagaacaagtgaagaaagaacaagaggagcttaaggagaaggaacaagcagcggaagctct |
400 |
Q |
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| T |
9883713 |
cttcactgagaaaccttgtggattcccttaagacagaattagaacaagtgaagaaagaacaagaggagcttaaggagaaggaacaagcagcggaagctct |
9883812 |
T |
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| Q |
401 |
tgctgcaaacctaactggcgaactacaaggtagcaaagaagaggaaaattctatggaaaacaaagaatctaatgagagtcatt |
483 |
Q |
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| T |
9883813 |
tgctgcaaacctaactggcgaactacaaggtagcaaagaagaggaaaattctatggaaaacaaagaatctaatgagagtcatt |
9883895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 55825727 - 55825650
Alignment:
| Q |
327 |
cttaagacagaattagaacaagtgaagaaagaacaagaggagcttaaggagaaggaacaagcagcggaagctcttgct |
404 |
Q |
| |
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|||| ||||||||| |||||||||||||||| ||||| || |||||||| ||| |||||||||| |||| ||||||| |
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| T |
55825727 |
cttaggacagaattgaaacaagtgaagaaagagcaagatgaacttaaggataagaaacaagcagcagaagttcttgct |
55825650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 404
Target Start/End: Original strand, 56149254 - 56149331
Alignment:
| Q |
327 |
cttaagacagaattagaacaagtgaagaaagaacaagaggagcttaaggagaaggaacaagcagcggaagctcttgct |
404 |
Q |
| |
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|||| ||||||||| |||||||||||||||| ||||| || |||||||| ||| |||||||||| |||| ||||||| |
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| T |
56149254 |
cttaggacagaattgaaacaagtgaagaaagagcaagatgaacttaaggataagaaacaagcagcagaagttcttgct |
56149331 |
T |
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