View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3126_low_2 (Length: 497)
Name: NF3126_low_2
Description: NF3126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3126_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 45079451 - 45078979
Alignment:
| Q |
18 |
ggtgatggcaaaacccttaacacaaaagcttttaatgcagcaataaccaaccttagccaatatgcaaatgatggtggtgcacaacttattgttccaccag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45079451 |
ggtgatggcaaaacccttaacacaaaagcttttaatgcagcaataaccaaccttagccaatatgcaaatgatggtggtgcacaacttattgttccaccag |
45079352 |
T |
|
| Q |
118 |
gtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgttattcttggatctcaggtatatactatatagtc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45079351 |
gtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgttattcttggatctcaggtatatattatatagtc |
45079252 |
T |
|
| Q |
218 |
actacttatatgatcacttttattttgtagcatttggaaaattttagaattagttaataaagtgtcatttatatatatgatataggatgaatcagaatgg |
317 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45079251 |
actacttatatgataacttttattttgtagcatttggaaaattttagaattagttaataaagtgtcatttatatatatgatataggatgaatcagaatgg |
45079152 |
T |
|
| Q |
318 |
cctcaacttcctgttttaccctcttatggaaggggaagagatgcacctgctggaaggtttagtagtctcatttttggaactaacctcactgacgtgatta |
417 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45079151 |
cctcaacttcttgttttaccatcttatggaaggggaagagatgcacctgctggaaggtttagtagtctcatttttggaactaacctcactgacgtgatta |
45079052 |
T |
|
| Q |
418 |
ttacatgcaattatttaatagtgttaaatttattatcttaacattgtaatgaggaagcagttttttattttga |
490 |
Q |
| |
|
|||| | ||||||| |||| ||||||||||||||| |||| ||| |||| ||||| ||||||| ||||||| |
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|
| T |
45079051 |
ttaccggtaattattaaatattgttaaatttattatattaaaatttaaatggggaagtagtttttaattttga |
45078979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 45076327 - 45076138
Alignment:
| Q |
18 |
ggtgatggcaaaacccttaacacaaaagcttttaatgcagcaataaccaaccttagccaatatgcaaatgatggtggtgcacaacttattgttccaccag |
117 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45076327 |
ggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaacttattgttccaccag |
45076228 |
T |
|
| Q |
118 |
gtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgttattcttggatctcaggtatata |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| |
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|
| T |
45076227 |
gtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagattctgtcattcttgcatctcaggtatata |
45076138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 45083742 - 45083553
Alignment:
| Q |
18 |
ggtgatggcaaaacccttaacacaaaagcttttaatgcagcaataaccaaccttagccaatatgcaaatgatggtggtgcacaacttattgttccaccag |
117 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45083742 |
ggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaacttattgttccaccag |
45083643 |
T |
|
| Q |
118 |
gtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgttattcttggatctcaggtatata |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
45083642 |
gtaaatggctaactggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtatata |
45083553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 45068690 - 45068503
Alignment:
| Q |
18 |
ggtgatggcaaaacccttaacacaaaagcttttaatgcagcaataaccaaccttagccaatatgcaaatgatggtggtgcacaacttattgttccaccag |
117 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45068690 |
ggtgacggcaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaacttattgttccaccag |
45068591 |
T |
|
| Q |
118 |
gtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgttattcttggatctcaggtata |
205 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| |||||||||||| |
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|
| T |
45068590 |
gtaaatggctaacaggaagcttcaatctcacaagccatttcactctttttctccaaaagggtgctgtcattcttgcatctcaggtata |
45068503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 291 - 409
Target Start/End: Complemental strand, 45068442 - 45068324
Alignment:
| Q |
291 |
tatatgatataggatgaatcagaatggcctcaacttcctgttttaccctcttatggaaggggaagagatgcacctgctggaaggtttagtagtctcattt |
390 |
Q |
| |
|
||||||||| |||||||||||||||||||| || | || ||||||| ||||||||||| | || ||||||||||| ||||||||||||||||||||||| |
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|
| T |
45068442 |
tatatgatacaggatgaatcagaatggcctaaattatcttttttaccatcttatggaagagaaaaagatgcacctgatggaaggtttagtagtctcattt |
45068343 |
T |
|
| Q |
391 |
ttggaactaacctcactga |
409 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
45068342 |
ttggaactaacctcactga |
45068324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 291 - 409
Target Start/End: Complemental strand, 45076067 - 45075949
Alignment:
| Q |
291 |
tatatgatataggatgaatcagaatggcctcaacttcctgttttaccctcttatggaaggggaagagatgcacctgctggaaggtttagtagtctcattt |
390 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||| ||||| ||||| ||| |||||||||||| |||||| ||| |
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|
| T |
45076067 |
tatatgattcaggatgaatcagaatggcctcaattccctgttttaccttcttatggaagtggaaggaatgcatctgatggaaggtttagcagtctcgttt |
45075968 |
T |
|
| Q |
391 |
ttggaactaacctcactga |
409 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
45075967 |
ttggaactaacctcactga |
45075949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 421
Target Start/End: Complemental strand, 45083484 - 45083367
Alignment:
| Q |
304 |
atgaatcagaatggcctcaacttcctgttttaccctcttatggaaggggaagagatgcacctgctggaaggtttagtagtctcatttttggaactaacct |
403 |
Q |
| |
|
||||||| || |||||||||||||||| |||||| ||||||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45083484 |
atgaatccgattggcctcaacttcctgctttaccatcttatggaagaggaagagaaaagcctggtggaaggtttagcagtctcatttttggaactaacct |
45083385 |
T |
|
| Q |
404 |
cactgacgtgattattac |
421 |
Q |
| |
|
|| ||| || |||||||| |
|
|
| T |
45083384 |
cattgatgttattattac |
45083367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 34506123 - 34505744
Alignment:
| Q |
18 |
ggtgatggcaaaacccttaacacaaaagcttttaatgcagcaataaccaaccttagccaatatgcaaatgatggtggtgcacaacttattgttccaccag |
117 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34506123 |
ggtgatggaaaaacctctaacacaaaagcttttaatactgcaataaccaaacttagccagtatgcaaatgatggtggtgcacaacttattgttccaccag |
34506024 |
T |
|
| Q |
118 |
gtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgttattcttggatctcaggtatatactatatagtc |
217 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |
|
|
| T |
34506023 |
gtaaatggttaactggaagcttcaatctcacaagccatttcactctttttctccaaaaaggcgcggtcattcttggatctcaggta-------------- |
34505938 |
T |
|
| Q |
218 |
actacttatatgatcacttttattttgtagcatttggaaaattttagaattagttaataaagtgtcatttatatatatgatataggatgaatcagaatgg |
317 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||||||| ||| ||||||||||| |||||| |||||||| ||||||||||| ||||| |
|
|
| T |
34505937 |
-----ttatacgatcactatt-ttttgtagcatttggaaaattttataatcagttaataaagggtcatt----gatatgatacaggatgaatcacaatgg |
34505848 |
T |
|
| Q |
318 |
cctcaacttcctgttttaccctcttatggaaggggaagagatgcacctgctggaaggtttagtagtctcatttttggaactaacctcactgacgtgatta |
417 |
Q |
| |
|
||||| |||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||| ||||| || | |
|
|
| T |
34505847 |
cctcagcttcctcctttaccatcttatggaaggggaagagatgcacctggtccaaggtttagtagtctcattttcggaactcacctcaccgacgttataa |
34505748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 202
Target Start/End: Original strand, 41332905 - 41333000
Alignment:
| Q |
107 |
tgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgttattcttggatctcaggt |
202 |
Q |
| |
|
|||||||||||| | |||| | || || |||||||||||||| || ||||||||| | || || || ||||||||||| |||||||| |||||||| |
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|
| T |
41332905 |
tgttccaccaggaagatggttgactggtagcttcaatctcaccagtcatttcactttattcctacacaaagatgctgtcattcttggttctcaggt |
41333000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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