View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3126_low_3 (Length: 462)
Name: NF3126_low_3
Description: NF3126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3126_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 22 - 446
Target Start/End: Complemental strand, 50391324 - 50390900
Alignment:
| Q |
22 |
cctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctgcaatgataatgaaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50391324 |
cctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctgcaataataatgaaa |
50391225 |
T |
|
| Q |
122 |
gataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgctttccaagtgcttccaattgtttcttagcttctttgtcataca |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50391224 |
gataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgctttccaagtgcttccaattgtttctcagcttctttgtcataca |
50391125 |
T |
|
| Q |
222 |
aatgaccagtgatcgccacattaagcacatataagccaattggacttgttatacttcctaaattatacaaagttgcataatatttaagtccaaaaagttc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
50391124 |
aatgaccagtgatcgccacattaagcacatataagccaattggacttgttatacttccaaaattatacaaagttgcataatatttaagtccaaagagttc |
50391025 |
T |
|
| Q |
322 |
tgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataataactgaagctacatagagaccctgtggcacatcaaatgctatcaaa |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50391024 |
tgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataataactgaagctacatagagaccctgtggcacatcaaatgctatcaaa |
50390925 |
T |
|
| Q |
422 |
aggtgtcccacacaagagacaaaga |
446 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
50390924 |
aggtgtcccacacaagagacaaaga |
50390900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 22 - 446
Target Start/End: Complemental strand, 50394598 - 50394174
Alignment:
| Q |
22 |
cctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctgcaatgataatgaaa |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| || |||||||||| ||| ||||||||| |
|
|
| T |
50394598 |
cctcttgtatatgtcacctttgtaaaactttctagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatgaaa |
50394499 |
T |
|
| Q |
122 |
gataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgctttccaagtgcttccaattgtttcttagcttctttgtcataca |
221 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50394498 |
gataacttgaaacaatcaacaccaacacaattcaattcatgcccttctattctatgctttccaagtgcttccaattgtttcttagcctctttgtcataca |
50394399 |
T |
|
| Q |
222 |
aatgaccagtgatcgccacattaagcacatataagccaattggacttgttatacttcctaaattatacaaagttgcataatatttaagtccaaaaagttc |
321 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50394398 |
aatgaccagtgatcttcacattaagcacatataatccaagtggacttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaaagttc |
50394299 |
T |
|
| Q |
322 |
tgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataataactgaagctacatagagaccctgtggcacatcaaatgctatcaaa |
421 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||| | |
|
|
| T |
50394298 |
tgatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctacgtagagaccctctggcacatcaaatgctatcaga |
50394199 |
T |
|
| Q |
422 |
aggtgtcccacacaagagacaaaga |
446 |
Q |
| |
|
|||||||| ||||| |||||||||| |
|
|
| T |
50394198 |
aggtgtccaacacatgagacaaaga |
50394174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 23 - 446
Target Start/End: Complemental strand, 50386178 - 50385755
Alignment:
| Q |
23 |
ctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctgcaatgataatgaaag |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| || |||||||||| || |||||||||| |
|
|
| T |
50386178 |
ctcttgtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtgataataatgaaag |
50386079 |
T |
|
| Q |
123 |
ataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgctttccaagtgcttccaattgtttcttagcttctttgtcatacaa |
222 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
50386078 |
ataacttgtaacaatcaacaccaacacaattcaattcctgcccttctattctttgctttccaagtgcttccaattgcttctttgcttctttgtcatacaa |
50385979 |
T |
|
| Q |
223 |
atgaccagtgatcgccacattaagcacatataagccaattggacttgttatacttcctaaattatacaaagttgcataatatttaagtccaaaaagttct |
322 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| |||| ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50385978 |
atgaccagcgatcttcacattaagcacatataatccaaggggacttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaaagttct |
50385879 |
T |
|
| Q |
323 |
gatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataataactgaagctacatagagaccctgtggcacatcaaatgctatcaaaa |
422 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||| || |
|
|
| T |
50385878 |
gatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctacgtagagaccctctggcacatcaaatgctatcagaa |
50385779 |
T |
|
| Q |
423 |
ggtgtcccacacaagagacaaaga |
446 |
Q |
| |
|
||||||| ||||| |||||||||| |
|
|
| T |
50385778 |
ggtgtccaacacatgagacaaaga |
50385755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 420
Target Start/End: Complemental strand, 50408029 - 50407810
Alignment:
| Q |
201 |
tcttagcttctttgtcatacaaatgaccagtgatcgccacattaagcacatataagccaattggacttgttatacttcctaaattatacaaagttgcata |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||| || | |||||||| | |||||| ||||||||||| | || | || || || |||||||| ||| |
|
|
| T |
50408029 |
tcttagcttctttgtcatataaatgaccagcgaccctaacattaagaaaatataatccaattggactagctaccccaccaaagttcatcaaagttgaata |
50407930 |
T |
|
| Q |
301 |
atatttaagtccaaaaagttctgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataataactgaagctacatagagaccctgt |
400 |
Q |
| |
|
|||||| | ||||| | || || || |||||||||| || |||||||| ||||||||||||||||| || || |||||||| | ||||| || | | |
|
|
| T |
50407929 |
atatttcaacccaaacaactccgaaattatggcaaaaaccaatggccattgtgcaccaaaacaaaatccaatgattactgaagcaaaatagatgccattt |
50407830 |
T |
|
| Q |
401 |
ggcacatcaaatgctatcaa |
420 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
50407829 |
tgcacatcaaaggctatcaa |
50407810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 115 - 255
Target Start/End: Complemental strand, 34297438 - 34297297
Alignment:
| Q |
115 |
aatgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgctt-tccaagtgcttccaattgtttcttagcttcttt |
213 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |||||||||||| |||| || | ||| | || |||||||||||||||||| || |||||||| || |
|
|
| T |
34297438 |
aatgaaagataacttcaaacaatcaacaccaatacaattcaattcatgccttttttttcctacgttgtccaagtgcttccaattgattattagcttcctt |
34297339 |
T |
|
| Q |
214 |
gtcatacaaatgaccagtgatcgccacattaagcacatataa |
255 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
34297338 |
gtcatacaaatgaccagtgattgtaacattaagcacatataa |
34297297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 375
Target Start/End: Complemental strand, 41335047 - 41334953
Alignment:
| Q |
281 |
aaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaacggccattgagcaccaaaacaaaatccgataat |
375 |
Q |
| |
|
||||| |||||||||| ||| ||||| | |||||||| ||| ||||| || ||||| | || ||||||||||| ||||||||||| || ||||| |
|
|
| T |
41335047 |
aaattgtacaaagttgaatagtatttcaatccaaaaatttcggatatgattgcaaacatcaatggccattgagctccaaaacaaaaaccaataat |
41334953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University