View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3126_low_4 (Length: 437)
Name: NF3126_low_4
Description: NF3126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3126_low_4 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 2 - 423
Target Start/End: Original strand, 32223962 - 32224382
Alignment:
| Q |
2 |
aaactttagaggtagagaaaggtttcctagaactaattcaagcaatgaaactagaagtagagtctcttcacaaaataaatccaatattttaagtcataaa |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |
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| T |
32223962 |
aaactttagaggtagagaaaggtttgctataactaattcaagcaatgaaactagaagcagtgtctcttcacaaaataaatacaatattttaagtcataaa |
32224061 |
T |
|
| Q |
102 |
tgcaaaaagtatggacatcatacatagcagccataaattggtctactcgagcaatttggttgcataaaataataagtgaaacatacattgcataattatc |
201 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
32224062 |
tgcaagaagtatggacatcatacataacagccataaattggtctactcgagcaatttggttgcataaaatattaagtgaaacatacattgcataattatc |
32224161 |
T |
|
| Q |
202 |
aagtgcaccataaaaatggctaacaattgatttgtatgacgagaccaaacctatattgttcaaaccatccaattctgcttgcagcatatatagaaagtaa |
301 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32224162 |
aagtgcgccatagaaatggctaacaattgatttgtatgacgagaccaaacctatattgttcaaaccatcaaattctgcttgcagcatatatagaaagtaa |
32224261 |
T |
|
| Q |
302 |
caaaaatagcatgtgtcatctaggaactagaaacattcatataaatgacaggttacatgccggagagatcctttccacatgaggataaatcatctaaaaa |
401 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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|
| T |
32224262 |
caaaaatagcaggtgtcatctaggaactagaaacattcatataaatgacaggttacatgttggagagatcc-ttccacatgaggataaatcatctaaaaa |
32224360 |
T |
|
| Q |
402 |
ttggggactctccgttatatgt |
423 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
32224361 |
ttggggactctccgttatatgt |
32224382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 2 - 401
Target Start/End: Original strand, 32241238 - 32241623
Alignment:
| Q |
2 |
aaactttagaggtagagaaaggtttcctagaactaattcaagcaatgaaactagaagtagagtctcttcacaaaataaatccaatattttaagtcataaa |
101 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||| || | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
32241238 |
aaactttagaggtagagcaaggtttccttgaactaattcaagcaatgaaattagaagcagtggctcttcacaaaataaatccaatattttaagtcataaa |
32241337 |
T |
|
| Q |
102 |
tgcaaaaagtatggacatcatacatagcagcca-----taaattggtctactcgagcaatttggttgcataaaataataagtgaaacatacattgcataa |
196 |
Q |
| |
|
||||| ||||||| || ||||||||| |||||| || |||| |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |
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|
| T |
32241338 |
tgcaagaagtatgaacgtcatacataacagccacaaattatattgttctactcgagcaatttagttacataaaatattaagtgaaacatacattgcataa |
32241437 |
T |
|
| Q |
197 |
ttatcaagtgcaccataaaaatggctaacaattgatttgtatgacgagaccaaacctatattgttcaaaccatccaattctgcttgcagcatatatagaa |
296 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| | | | | ||| |||||||||| |
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|
| T |
32241438 |
ttatcaagtgcaccatagaaatggctgacaattgat-------------ccaaacctatattgttcaaaccaacaa-----ggtagcaagatatatagaa |
32241519 |
T |
|
| Q |
297 |
agtaacaaaaatagcatgtgtcatctaggaactagaaacattcatataaatgacaggttacatgccggagagatcctttccacatgaggataaatcatct |
396 |
Q |
| |
|
| ||||||||| | || ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || ||| ||||||||||| ||| |
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|
| T |
32241520 |
actaacaaaaacaccaggtgtcatctaggaactagaaacattcatataaacggcaggttacatgccggagagatcc-ttggacaggaggataaatcttct |
32241618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 32227998 - 32227796
Alignment:
| Q |
7 |
ttagaggtagagaaaggtttcctagaactaattcaagcaatgaaactagaagtagagtctcttcacaaaataaatccaatattttaagtcataaatgcaa |
106 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
32227998 |
ttagaggtagagcaaggtttcctagaaataattcaagcaatgaaactagaagtagtggctcttcacaaaataaatccaatattctaagtcataaatgcaa |
32227899 |
T |
|
| Q |
107 |
aaagtatggacatcatacatagcagccataaattggtctactcgagcaatttggttgcataaaataataagtgaaacatacattgcataattatcaagtg |
206 |
Q |
| |
|
|| |||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||||||| |||||||||||| ||||||||| |||||||||| |
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|
| T |
32227898 |
gaactatggacatcatacatagcatccacaaattgttctactcgagcaatttggttacataaaatattaagtgaaacattcattgcatagttatcaagtg |
32227799 |
T |
|
| Q |
207 |
cac |
209 |
Q |
| |
|
||| |
|
|
| T |
32227798 |
cac |
32227796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 317 - 425
Target Start/End: Original strand, 32241633 - 32241740
Alignment:
| Q |
317 |
tcatctaggaactagaaacattcatataaatgacaggttacatgccggagagatcctttccacatgaggataaatcatctaaaaattggggactctccgt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| || |||||||| |||| ||| ||||||||||| | |
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|
| T |
32241633 |
tcatctaggaactagaaacattcatataaatgacaggttacatgccggagagatcc-ttggacaggatgataaatcttctagaaaccggggactctccat |
32241731 |
T |
|
| Q |
417 |
tatatgtga |
425 |
Q |
| |
|
| ||||||| |
|
|
| T |
32241732 |
tctatgtga |
32241740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 326 - 414
Target Start/End: Complemental strand, 32227003 - 32226916
Alignment:
| Q |
326 |
aactagaaacattcatataaatgacaggttacatgccggagagatcctttccacatgaggataaatcatctaaaaattggggactctcc |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |||||||||| |||||||||| |||||||||| |
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|
| T |
32227003 |
aactagaaacattcatataaatgacaggttacatgtcggagagatcc-ttggacagaaggataaatcgtctaaaaatttgggactctcc |
32226916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 32227056 - 32227003
Alignment:
| Q |
215 |
aaatggctaacaattgatttgtatgacgagaccaaacctatattgttcaaacca |
268 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| |||||||||||||||||||||| |
|
|
| T |
32227056 |
aaatggctaacaattgatttgtttgaagagatcaaacctatattgttcaaacca |
32227003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 410
Target Start/End: Original strand, 16257739 - 16258144
Alignment:
| Q |
2 |
aaactttagaggtagagaaaggtttcctagaactaattcaagcaatgaaactagaagtagagtctcttcacaaaataaatccaatattttaagtcataaa |
101 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| ||||||| ||| |
|
|
| T |
16257739 |
aaactttagaggtagagcaaggtttcctagaactaattcaagcaatgaaactagaagtagtggctcttcacaaaataaatgaaatattctaagtcagaaa |
16257838 |
T |
|
| Q |
102 |
tgcaaaaagtatggacatcatacatagcagccataaattggtctactcgagcaatttggttgcataaaataataagtgaaacatacattgcataattatc |
201 |
Q |
| |
|
||||| ||||||| | ||||||||||||||||| |||||| |||||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
16257839 |
tgcaagaagtatgaatatcatacatagcagccacaaattgttctacttgagcaatttggttacataaaataataagagaaacatacattgcatagttatc |
16257938 |
T |
|
| Q |
202 |
aagtgcaccataaaaatggctaacaattgatttgtatgacgagaccaaacctatattgttcaaaccatccaattctgcttgcagcatatatagaaagtaa |
301 |
Q |
| |
|
|||||||||| | ||||| || || ||||||||||| | |||||||||||||||||||||||||| ||||| | | |||| |||||||||| ||| |
|
|
| T |
16257939 |
aagtgcaccacataaatgcctggcagttgatttgtattaagagaccaaacctatattgttcaaacc-gaaaattccggtagcagtgtatatagaaactaa |
16258037 |
T |
|
| Q |
302 |
caaaaatagcatgtgtcatctaggaactagaaacattcatataaatgacaggttacatgccggagagatcctttccacatgaggataaatcatctaaaaa |
401 |
Q |
| |
|
|||||| | || || |||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || | | ||| ||||||| |||||||| |
|
|
| T |
16258038 |
caaaaacaccaggtatcatctaggaactagaaa-attcatataaatgacaggttacatgcgggagagatcc-ttggataggagaataaatcttctaaaaa |
16258135 |
T |
|
| Q |
402 |
ttggggact |
410 |
Q |
| |
|
||||||||| |
|
|
| T |
16258136 |
ttggggact |
16258144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 9619459 - 9619357
Alignment:
| Q |
108 |
aagtatggacatcatacatagcagccataaattggtctactcgagcaatttggttgcataaaataataagtgaaacatacattgcataattatcaagtgc |
207 |
Q |
| |
|
|||||||||||| ||| ||| |||||| ||||| | ||||| |||||||||||| || ||||| |||| ||||||||||||| | |||| |||||| |
|
|
| T |
9619459 |
aagtatggacattatatataacagccacaaattattttactcaagcaatttggttacagaaaatgctaagcataacatacattgcacagttattaagtgc |
9619360 |
T |
|
| Q |
208 |
acc |
210 |
Q |
| |
|
||| |
|
|
| T |
9619359 |
acc |
9619357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 367
Target Start/End: Complemental strand, 20112439 - 20112357
Alignment:
| Q |
286 |
catatatagaaagtaacaaaaatagcatgtgt-catctaggaactagaaacattcatataaatgacaggttacatgccggaga |
367 |
Q |
| |
|
|||||| ||||| ||||||||| | || || | ||| ||||| |||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
20112439 |
catataaagaaattaacaaaaacaccaggtatacatataggagctagaaacattcatataattgacagcttacatgcgggaga |
20112357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 19969041 - 19969097
Alignment:
| Q |
179 |
gaaacatacattgcataattatcaagtgcaccataaaaatggctaacaattgatttg |
235 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||||||| |||| || ||||||||| |
|
|
| T |
19969041 |
gaaacatactttgcatagttatcaagtgctccataaaattggccgaccattgatttg |
19969097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 414
Target Start/End: Original strand, 19969182 - 19969276
Alignment:
| Q |
318 |
catctaggaactagaaacattcatataaatgacaggttacatgccggagagatcctttccacatgaggataaatcatctaaaaattggggactctcc |
414 |
Q |
| |
|
|||||| ||||||| || ||||| |||| |||||| |||||||| |||||||| ||| ||| || ||||| || ||||||||||||||||||||| |
|
|
| T |
19969182 |
catctaagaactagtaagattcagataa-tgacagcttacatgcgggagagatacttga-acaggaagataagtcttctaaaaattggggactctcc |
19969276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 20049833 - 20049789
Alignment:
| Q |
329 |
tagaaacattcatataaatgacaggttacatgccggagagatcct |
373 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
20049833 |
tagaaacattcatataaatgacaccttacatgcaagagagatcct |
20049789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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