View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3126_low_8 (Length: 248)
Name: NF3126_low_8
Description: NF3126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3126_low_8 |
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| [»] chr1 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 45078702 - 45078940
Alignment:
| Q |
10 |
atgaagcttgatcagaagaatgaaatattattgtattaaggttgagaaaatttaaaaagagtgcattatcaaacctgctgtaaattggatgaacaaacca |
109 |
Q |
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| T |
45078702 |
atgaagcttgatcagaagaagaatgaaatattgtattaaggttgagaaaatttaaaaagagtgcattatcaaacctgctgtaaattggatgaacaaacca |
45078801 |
T |
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| Q |
110 |
agttggagagttgatcaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatgtatggtctagtgagtgtcaattgtttcttgtgg |
209 |
Q |
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| T |
45078802 |
tgttggagagttgatcaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatgtatggtctagtgagtgtcaattgtttcttgtgg |
45078901 |
T |
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| Q |
210 |
aatttgtcccaccaatatgatccttgtccatcaattgtc |
248 |
Q |
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| T |
45078902 |
aatttgtcccaccaatatgatccttgtccatcaattgtc |
45078940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 77 - 248
Target Start/End: Original strand, 45068047 - 45068218
Alignment:
| Q |
77 |
atcaaacctgctgtaaattggatgaacaaaccaagttggagagttgatcaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatg |
176 |
Q |
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| T |
45068047 |
atcaaacctgctgtaaattggatggacaaaccaattaggagagttgatcaaagtgagatttgatatttggatttgatcagaatacataatctcaatcata |
45068146 |
T |
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| Q |
177 |
tatggtctagtgagtgtcaattgtttcttgtggaatttgtcccaccaatatgatccttgtccatcaattgtc |
248 |
Q |
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| T |
45068147 |
tatggcctagtgattttcaattgtttcttttggaacttgtcccaccaagtagatccttgtccatcaattgtc |
45068218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 77 - 248
Target Start/End: Original strand, 45075664 - 45075835
Alignment:
| Q |
77 |
atcaaacctgctgtaaattggatgaacaaaccaagttggagagttgatcaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatg |
176 |
Q |
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| T |
45075664 |
atcaaacctgctgtaaactggatggacaaaccaagaaggggaattgatcaaagtgagattggatatttggatttgatcagaatacataatctcaatcatg |
45075763 |
T |
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| Q |
177 |
tatggtctagtgagtgtcaattgtttcttgtggaatttgtcccaccaatatgatccttgtccatcaattgtc |
248 |
Q |
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| T |
45075764 |
tatggcctagtgattttcatttgtcccttgtggaacttgtcccaccaataagatccttgtccatcaattgtc |
45075835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 78 - 248
Target Start/End: Original strand, 45083095 - 45083265
Alignment:
| Q |
78 |
tcaaacctgctgtaaattggatgaacaaaccaagttggagagttgatcaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatgt |
177 |
Q |
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| T |
45083095 |
tcaaacctgctgtaaactggatgtacaaaccaagaaggggaattgaccaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatat |
45083194 |
T |
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| Q |
178 |
atggtctagtgagtgtcaattgtttcttgtggaatttgtcccaccaatatgatccttgtccatcaattgtc |
248 |
Q |
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| T |
45083195 |
atggcctagtgattttcaattgtttcttttggaacttgtcccaccaagtagatccttgtccatcaattgtc |
45083265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 43 - 248
Target Start/End: Original strand, 34505432 - 34505637
Alignment:
| Q |
43 |
tattaaggttgagaaaatttaaaaagagtgcattatcaaacctgctgtaaattggatgaacaaaccaagttggagagttgatcaaagtgagatttgatat |
142 |
Q |
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|||| |||||||||||| || |||| ||||||||||||||||||||||| ||||||| |||||||||| || || ||||||||||||||||||||||| |
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| T |
34505432 |
tattgaggttgagaaaaattgaaaatggtgcattatcaaacctgctgtaagttggatggacaaaccaagaaggggaattgatcaaagtgagatttgatat |
34505531 |
T |
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| Q |
143 |
ttggatttgatcagaatacataatctcaatcatgtatggtctagtgagtgtcaattgtttcttgtggaatttgtcccaccaatatgatccttgtccatca |
242 |
Q |
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| T |
34505532 |
ttggatttgatcagaatacaaaatctcaatcatgtatggcctagtgattttcaattgtttattatgaaacttgtcccaccaatatgatccttgtccatca |
34505631 |
T |
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| Q |
243 |
attgtc |
248 |
Q |
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| T |
34505632 |
attgtc |
34505637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 247
Target Start/End: Original strand, 17587920 - 17588064
Alignment:
| Q |
103 |
caaaccaagttggagagttgatcaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatgtatggtctagtgagtgtcaattgttt |
202 |
Q |
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| T |
17587920 |
caaaccaagatggagaattaaacaaagtaagatttgatatttgaattttgttagagaacataatctcaatcaagtatggcctggtgagtttcaattcatc |
17588019 |
T |
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| Q |
203 |
cttgtggaatttgtcccaccaatatgatccttgtccatcaattgt |
247 |
Q |
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| T |
17588020 |
tttgtggaacttgttccaccaataagaaccttgaccatcaattgt |
17588064 |
T |
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