View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3128-Insertion-1 (Length: 970)

Name: NF3128-Insertion-1
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3128-Insertion-1
NF3128-Insertion-1
[»] chr2 (13 HSPs)
chr2 (328-970)||(31648224-31648870)
chr2 (361-830)||(31662740-31663195)
chr2 (99-273)||(31648924-31649098)
chr2 (641-791)||(31655427-31655577)
chr2 (359-612)||(31655576-31655839)
chr2 (371-509)||(41646127-41646265)
chr2 (7-88)||(31649150-31649231)
chr2 (381-509)||(7573521-7573648)
chr2 (381-509)||(16668116-16668243)
chr2 (371-509)||(29455905-29456042)
chr2 (371-497)||(43564706-43564832)
chr2 (380-449)||(5968310-5968378)
chr2 (857-962)||(31655254-31655360)
[»] chr4 (8 HSPs)
chr4 (371-509)||(53829930-53830068)
chr4 (371-509)||(21632197-21632335)
chr4 (371-509)||(21803473-21803611)
chr4 (371-497)||(5431297-5431423)
chr4 (380-509)||(20036820-20036949)
chr4 (381-509)||(2504430-2504557)
chr4 (385-509)||(34737246-34737370)
chr4 (381-509)||(46092883-46093010)
[»] scaffold0516 (2 HSPs)
scaffold0516 (371-509)||(3833-3971)
scaffold0516 (382-498)||(4071-4185)
[»] scaffold0084 (2 HSPs)
scaffold0084 (380-509)||(11468-11597)
scaffold0084 (382-472)||(13325-13417)
[»] chr7 (3 HSPs)
chr7 (371-509)||(47233247-47233385)
chr7 (381-509)||(25419005-25419132)
chr7 (371-497)||(44394252-44394378)
[»] chr1 (4 HSPs)
chr1 (371-509)||(39624017-39624155)
chr1 (381-509)||(13786814-13786941)
chr1 (381-509)||(25807201-25807328)
chr1 (371-469)||(22912075-22912171)
[»] chr8 (5 HSPs)
chr8 (371-509)||(4138858-4138996)
chr8 (371-509)||(10186929-10187067)
chr8 (371-504)||(918414-918547)
chr8 (371-497)||(20172541-20172667)
chr8 (371-453)||(11427590-11427672)
[»] chr6 (3 HSPs)
chr6 (381-509)||(13432883-13433010)
chr6 (371-504)||(18883132-18883266)
chr6 (371-497)||(16711541-16711666)
[»] chr3 (4 HSPs)
chr3 (381-509)||(52350311-52350438)
chr3 (371-497)||(26215899-26216025)
chr3 (371-509)||(48266833-48266971)
chr3 (371-509)||(35870921-35871057)
[»] chr5 (3 HSPs)
chr5 (381-509)||(36991626-36991753)
chr5 (381-509)||(37301349-37301477)
chr5 (371-509)||(21604556-21604693)


Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 328 - 970
Target Start/End: Complemental strand, 31648870 - 31648224
Alignment:
Q  328 cctttgaaacaagtccaatacttataggaacaaagtataaaacatggattatgattcttactttctcttgttcgacacttttggatttttggtgtttaga 427  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||     
T  31648870 ccttcgaaacaagtccaatacttataggaacaaagcataaaacatggattatgattcttactttctcttgttcgacactttcggatttttggtgttgagt 31648771  T
Q  428 gttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaattagttgaaaaggaaaaatccctaattgttacggggactgccacatcat 527  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||||  |||  ||||  || ||| |||||||||    
T  31648770 gttttgagtttcttgtaagctccatccgaatcctcctccatcttatgacaattagttgaaaaagaaaaatctttaacagttataggaactaccacatcat 31648671  T
Q  528 tggactctataccattattcaaaagcaaaagtgtatttgtcaatgatttaagaacctcacgcacaagatcttcagcaacaatattaaagggtaacacgtt 627  Q
    |||| ||| | ||||| ||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||    
T  31648670 tggagtctttgccattgttcaacagcaaaagtgtgtttgtcaatgatttgagcacctcacgcacaagatcttcagcaacaatatttaagggtaacacttt 31648571  T
Q  628 tgatgattttgtgtttgaccctttaacttctttaatatttgacttatcatcaaaagttaatacttcaagtaattgatttgccatgtcacgtcctcttata 727  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31648570 tgatgattttgtgtttgaccctttaacttctctaatatttgacttatcatcaaaagttaatacttcaagtaattgatttgccatgtcacgtcctcttata 31648471  T
Q  728 agttcatcttccattgcctttttgccataatttgttggaagccaaagcatattctccattatatttttggtagtgtaaattaattaacaccttctataac 827  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31648470 agttcatcttccattgcctttttgccataatttgttggaagccaaagcatattctccattatatttttggtagtgtaaattaattaacaccttctataac 31648371  T
Q  828 tagtaattagcta-gctaaataaggtattaatggatatgaaga-gaaaaagagggatatggccttttattcaacttgataaccttcctacttgcaaattt 925  Q
    |||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31648370 tagtaactagctaggctaaataaggtattaatggatatgaagaggaaaaggagggatatggccttttattcaacttgttaaccttcctacttgcaaattt 31648271  T
Q  926 -aaaactgttcccattt-gaagtatatagacaaaagttcctagtcag 970  Q
     |||||||||||||||| |||||||||||||||||||||||||||||    
T  31648270 aaaaactgttcccatttggaagtatatagacaaaagttcctagtcag 31648224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 361 - 830
Target Start/End: Original strand, 31662740 - 31663195
Alignment:
Q  361 agtataaaacatggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcc 460  Q
    ||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||| ||| |||||| ||||||    
T  31662740 agtataagacatggattataaatcttactttctcttgttcgacccttttggatttttggtgttgagagtcttgagtttcttgcaagatccatcaaaatcc 31662839  T
Q  461 tcctccatcttaggaaaattagttgaaaaggaaaaatccctaattgttacggggactgccacatcattggactctataccattattcaaaagcaaaagtg 560  Q
    ||||| | |||     |||| ||||| || |||||||| ||||| ||||  || |  |||||||||||||| ||| | |  |||||||| || |||||||    
T  31662840 tcctcaagcttgttgcaattcgttgagaaagaaaaatctctaatagttataggaagagccacatcattggagtctttgcagttattcaagagtaaaagtg 31662939  T
Q  561 tatttgtcaatgatttaagaacctcacgcacaagatcttcagcaacaatattaaagggtaacacgtttgatgattttgtgtttgaccctttaacttcttt 660  Q
    ||||||||||||||||||| |||||||||||||||||| | ||||      | |||||||||||   |||||||||||  ||||||||||| ||||||      
T  31662940 tatttgtcaatgatttaagtacctcacgcacaagatctcctgcaa------ttaagggtaacactggtgatgattttgaatttgaccctttcacttct-- 31663031  T
Q  661 aatatttgacttatcatcaaaagttaatacttcaagtaattgatttgccatgtcacgtcctcttataagttcatcttccattgcctttttgccataattt 760  Q
     |||||||||||||||||| |||| | | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||   | ||||    
T  31663032 -atatttgacttatcatcataagtcagtgcctcaagtaattgatttgccatgtcacgtcctcttataagctcatcttccattgccttcttg---tcattt 31663127  T
Q  761 gttggaagccaaagcatattctccattatatttttggtagtgtaaattaattaacacctt-ctataactag 830  Q
    |||||||||||||||| ||||||||||   ||||||||||||||||||||||||||| || ||||||||||    
T  31663128 gttggaagccaaagcagattctccatt---tttttggtagtgtaaattaattaacactttgctataactag 31663195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 99 - 273
Target Start/End: Complemental strand, 31649098 - 31648924
Alignment:
Q  99 atatatcggagaaagagagagattgcaaaattttgtattagtttaatgacataattgactgttaattcgaaaatcaatcttataactaaatttggatatc 198  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31649098 atatatcggagaaagagagaaattgcaaaattttctattagtttaatgacataattgactgttaattcgaaaatcaatcttataactaaatttggatatc 31648999  T
Q  199 aagattattgttgaatctagcaaagttttgtccatgtttaaaactttagaacatttggaaacagaaatccttgtt 273  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31648998 aagattattgttgaatctagctaagttttgtccatgtttaaaactttagaacatttggaaacagaaatccttgtt 31648924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 641 - 791
Target Start/End: Complemental strand, 31655577 - 31655427
Alignment:
Q  641 tttgaccctttaacttctttaatatttgacttatcatcaaaagttaatacttcaagtaattgatttgccatgtcacgtcctcttataagttcatcttcca 740  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||    
T  31655577 tttgaccctttaacttctctaatatttgacttatcatcaaaagttaatacttcaagtaattgatttgccatgtcacgtcctcttattagctcttcttcca 31655478  T
Q  741 ttgcctttttgccataatttgttggaagccaaagcatattctccattatat 791  Q
    |||||||||| || |||||||| |||||| |||||  ||||||||| ||||    
T  31655477 ttgcctttttaccgtaatttgtaggaagcaaaagctgattctccatgatat 31655427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 359 - 612
Target Start/End: Complemental strand, 31655839 - 31655576
Alignment:
Q  359 aaagtataaaac-atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaa 457  Q
    |||||||||||| |||||| |  ||||||||||||||||||||||| ||||||||||||||||||| ||||||| || |||||||||| |||  ||||||    
T  31655839 aaagtataaaaccatggataagaattcttactttctcttgttcgacccttttggatttttggtgttgagagtttcgaatttcttgtaacctctgtccaaa 31655740  T
Q  458 tcctcctccatcttaggaaaattagttgaaaaggaaaaatccctaattgt--tacg-------gggactgccacatcattggactctataccattattca 548  Q
    |||||||||||||| ||  |||| | |||||| |||||||| || || ||  || |       || || |||| ||||||||||||| | ||||| ||||    
T  31655739 tcctcctccatctttgggcaattggatgaaaaagaaaaatctctgatagttgtaggagttgtaggaacagccatatcattggactctttgccattgttca 31655640  T
Q  549 aaagcaaaagtgtatttgtcaatgatttaagaacctcacgcacaagatcttcagcaacaatatt 612  Q
    | | |||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||    
T  31655639 acatcaaaagtgtatttgtcaatgatttgagcacctcaagcacaagatcttcagcaacaatatt 31655576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 371 - 509
Target Start/End: Original strand, 41646127 - 41646265
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||| |||||||    
T  41646127 atggataaagattcttactttctcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcgtccatct 41646226  T
Q  471 taggaaaattagttgaaaaggaaaaatccctaattgtta 509  Q
    || |||||||| |||| ||| ||||||| ||||| ||||    
T  41646227 tatgaaaattaattgagaagaaaaaatctctaatagtta 41646265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 31649231 - 31649150
Alignment:
Q  7 agtttttgcaaaaccagttggcggaggagagggagaaaaatgaaggatttagaaaataaagttgtactaaattatttacaca 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31649231 agtttttgcaaaaccagttggcggaggagagggagaaaaatgaaggatttagaaaataaagttgtactaaactatttacaca 31649150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 381 - 509
Target Start/End: Original strand, 7573521 - 7573648
Alignment:
Q  381 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 480  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  7573521 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 7573619  T
Q  481 agttgaaaaggaaaaatccctaattgtta 509  Q
    |||||| ||||||||||| ||||| ||||    
T  7573620 agttgagaaggaaaaatctctaatagtta 7573648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 381 - 509
Target Start/End: Original strand, 16668116 - 16668243
Alignment:
Q  381 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 480  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  16668116 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 16668214  T
Q  481 agttgaaaaggaaaaatccctaattgtta 509  Q
    || ||| ||||||||||| ||||| ||||    
T  16668215 agctgagaaggaaaaatctctaatagtta 16668243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 371 - 509
Target Start/End: Complemental strand, 29456042 - 29455905
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||||||| ||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||| |    
T  29456042 atggataaagattcttactttatcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccat-t 29455944  T
Q  471 taggaaaattagttgaaaaggaaaaatccctaattgtta 509  Q
    || |  |||||||||| ||||||||| | ||||| ||||    
T  29455943 tatggcaattagttgagaaggaaaaaactctaatagtta 29455905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 371 - 497
Target Start/End: Complemental strand, 43564832 - 43564706
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||||||| ||||||||||| |||| | |||||||||||| |||||||||||||||||||||| |||| ||||||| ||||||||||    
T  43564832 atggataaagattcttactttatcttgttcgaccctttagaatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcatcctccatct 43564733  T
Q  471 taggaaaattagttgaaaaggaaaaat 497  Q
    || |  |||||||||  ||||||||||    
T  43564732 tatggcaattagttgggaaggaaaaat 43564706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 380 - 449
Target Start/End: Original strand, 5968310 - 5968378
Alignment:
Q  380 gattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctc 449  Q
    |||||||| ||||||||||||||| |||| ||||||||| |||| |||||||| ||||||||||||||||    
T  5968310 gattcttagtttctcttgttcgac-ctttaggatttttgatgttgagagttttaagtttcttgtaagctc 5968378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 857 - 962
Target Start/End: Complemental strand, 31655360 - 31655254
Alignment:
Q  857 atggatatgaagaga--aaaagagggatatggccttttattcaacttgataaccttcctacttgcaaatttaaaa-ctgttcccatttgaagtatataga 953  Q
    |||||||||||||||  ||||||||   | | |||||||||||||||| ||  ||||||||||||||||||||||  || ||||||||| ||||| ||||    
T  31655360 atggatatgaagagagaaaaagaggtgcacgaccttttattcaacttggta--cttcctacttgcaaatttaaaatttgatcccatttggagtatttaga 31655263  T
Q  954 caaaagttc 962  Q
    |||||||||    
T  31655262 caaaagttc 31655254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 371 - 509
Target Start/End: Original strand, 53829930 - 53830068
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||    
T  53829930 atggataaagattcttactttctcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatct 53830029  T
Q  471 taggaaaattagttgaaaaggaaaaatccctaattgtta 509  Q
    || | ||||||||||| ||||||||||| ||||| ||||    
T  53830030 tatggaaattagttgagaaggaaaaatctctaatagtta 53830068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 371 - 509
Target Start/End: Original strand, 21632197 - 21632335
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||    
T  21632197 atggataaagattcttactttctcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatccatcctaatcctcctccatct 21632296  T
Q  471 taggaaaattagttgaaaaggaaaaatccctaattgtta 509  Q
    || |  |||||||||| ||||||||||| ||||| ||||    
T  21632297 tatggcaattagttgagaaggaaaaatctctaatagtta 21632335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 371 - 509
Target Start/End: Complemental strand, 21803611 - 21803473
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||    
T  21803611 atggataaagattcttactttctcttgttcgaccctttaggaattttggtgttgagagttttgagtttcttgtaagatccatcctaatcctcctccatct 21803512  T
Q  471 taggaaaattagttgaaaaggaaaaatccctaattgtta 509  Q
    || |  |||||||||| ||||||||||| ||||| ||||    
T  21803511 tatggcaattagttgagaaggaaaaatctctaatagtta 21803473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 371 - 497
Target Start/End: Complemental strand, 5431423 - 5431297
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||| ||||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  5431423 atggataaagattcttagtttctcttgttcgaccctttaggatttttgatgttgagagttttgagtttcttgtaagctccatcaaaatcctcctccatct 5431324  T
Q  471 taggaaaattagttgaaaaggaaaaat 497  Q
    || |  |||||||||| ||||||||||    
T  5431323 tatggcaattagttgagaaggaaaaat 5431297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 380 - 509
Target Start/End: Complemental strand, 20036949 - 20036820
Alignment:
Q  380 gattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaat 479  Q
    ||||||||| || ||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |  |||    
T  20036949 gattcttacgttatcttgttcgacccttttgaatttttggtgttgagagttttgagtttcttgtaagctccatccaaatccacctccttcttatggcaat 20036850  T
Q  480 tagttgaaaaggaaaaatccctaattgtta 509  Q
    ||||||| ||||||||||| ||||| ||||    
T  20036849 tagttgagaaggaaaaatctctaatagtta 20036820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 381 - 509
Target Start/End: Original strand, 2504430 - 2504557
Alignment:
Q  381 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 480  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  2504430 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 2504528  T
Q  481 agttgaaaaggaaaaatccctaattgtta 509  Q
    |||||| ||||||||||| ||||| ||||    
T  2504529 agttgagaaggaaaaatctctaatagtta 2504557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 385 - 509
Target Start/End: Original strand, 34737246 - 34737370
Alignment:
Q  385 ttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaattagtt 484  Q
    ||||||| ||||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| || ||||||||    
T  34737246 ttactttatcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatccatccaaatcctccttcatcttatgacaattagtt 34737345  T
Q  485 gaaaaggaaaaatccctaattgtta 509  Q
    || || |||||||| ||||| ||||    
T  34737346 gagaatgaaaaatctctaatagtta 34737370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 381 - 509
Target Start/End: Complemental strand, 46093010 - 46092883
Alignment:
Q  381 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 480  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||    ||||    
T  46093010 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttattgcaatt 46092912  T
Q  481 agttgaaaaggaaaaatccctaattgtta 509  Q
    |||||| ||||||||||| ||||| ||||    
T  46092911 agttgagaaggaaaaatctctaatagtta 46092883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 371 - 509
Target Start/End: Complemental strand, 3971 - 3833
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||    
T  3971 atggataaagattcttactttttcttgttcgacccttttggatttttggtgttgagagttttgagtttcttgtcagctccatccaaatcttcctccatct 3872  T
Q  471 taggaaaattagttgaaaaggaaaaatccctaattgtta 509  Q
    || |  |||||||||| |||||||| |||||||| ||||    
T  3871 tatggcaattagttgagaaggaaaagtccctaatagtta 3833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 382 - 498
Target Start/End: Complemental strand, 4185 - 4071
Alignment:
Q  382 ttcttactttctcttgttcgacacttttggatttttggtgtttagagtttt-gagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 480  Q
    |||||||||||||||||| ||  ||||||||||||||||||| |||||||| ||||||   |||||||||||||||||| |||||||||||| |  ||||    
T  4185 ttcttactttctcttgtttgatccttttggatttttggtgttgagagtttttgagttt---gtaagctccatccaaatcttcctccatcttatggcaatt 4089  T
Q  481 agttgaaaaggaaaaatc 498  Q
    |||||| |||||| ||||    
T  4088 agttgagaaggaagaatc 4071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 380 - 509
Target Start/End: Complemental strand, 11597 - 11468
Alignment:
Q  380 gattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaat 479  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||| |||| |||||||||| ||||||||||||||| |||||||||||| |  |||    
T  11597 gattcttactttctcttgttcgacccttttggatttttggtgttgagacttttaagtttcttgtcagctccatccaaatcttcctccatcttatgggaat 11498  T
Q  480 tagttgaaaaggaaaaatccctaattgtta 509  Q
    ||||||| ||||||||||||||||| ||||    
T  11497 tagttgagaaggaaaaatccctaatagtta 11468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 382 - 472
Target Start/End: Complemental strand, 13417 - 13325
Alignment:
Q  382 ttcttactttctcttgttcgacacttttggatttttggtgtttagag-ttttgag-tttcttgtaagctccatccaaatcctcctccatctta 472  Q
    |||||||||||||||||| ||  |||||||||||||| |||| |||| ||||||| ||| ||| || ||||||||||||| ||||||||||||    
T  13417 ttcttactttctcttgtttgatccttttggatttttgttgttgagagtttttgagtttttttgcaacctccatccaaatcttcctccatctta 13325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 8e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 371 - 509
Target Start/End: Original strand, 47233247 - 47233385
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| | || ||||||||||||||||||    
T  47233247 atggataaagattcttactttctcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagattcaaccaaatcctcctccatct 47233346  T
Q  471 taggaaaattagttgaaaaggaaaaatccctaattgtta 509  Q
    || || |||||||||  ||||||||||| ||||| ||||    
T  47233347 tatgacaattagttgtgaaggaaaaatctctaatagtta 47233385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 381 - 509
Target Start/End: Original strand, 25419005 - 25419132
Alignment:
Q  381 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 480  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  25419005 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 25419103  T
Q  481 agttgaaaaggaaaaatccctaattgtta 509  Q
    |||||| ||||||||||| ||||| ||||    
T  25419104 agttgagaaggaaaaatctctaatagtta 25419132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 371 - 497
Target Start/End: Complemental strand, 44394378 - 44394252
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||| |||||||||||||||  ||| ||||||||| |||| |||||||||||||||||||||||| |||| ||||||||||||||||    
T  44394378 atggataaagattcttagtttctcttgttcgaccttttaggatttttgatgttgagagttttgagtttcttgtaagcttcatcaaaatcctcctccatct 44394279  T
Q  471 taggaaaattagttgaaaaggaaaaat 497  Q
    || |  |||||||||| ||||||||||    
T  44394278 tatggcaattagttgagaaggaaaaat 44394252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 8e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 371 - 509
Target Start/End: Complemental strand, 39624155 - 39624017
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  39624155 atggataaagattcttactttcttttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatccatccaaatcctcgtccatct 39624056  T
Q  471 taggaaaattagttgaaaaggaaaaatccctaattgtta 509  Q
    || |  |||||||||| ||||||||||| ||||| ||||    
T  39624055 tatggcaattagttgagaaggaaaaatctctaatagtta 39624017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 381 - 509
Target Start/End: Complemental strand, 13786941 - 13786814
Alignment:
Q  381 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 480  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  13786941 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 13786843  T
Q  481 agttgaaaaggaaaaatccctaattgtta 509  Q
    |||||| ||||||||||| ||||| ||||    
T  13786842 agttgagaaggaaaaatctctaatagtta 13786814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 381 - 509
Target Start/End: Original strand, 25807201 - 25807328
Alignment:
Q  381 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 480  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  25807201 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 25807299  T
Q  481 agttgaaaaggaaaaatccctaattgtta 509  Q
    |||||| ||||||||||| ||||| ||||    
T  25807300 agttgagaaggaaaaatctctaatagtta 25807328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 371 - 469
Target Start/End: Original strand, 22912075 - 22912171
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatc 469  Q
    |||||| | |||||||||||||||||||||||| ||||   |||||||||||| ||||||||||||||||  |||| ||||||||||||||||||||||    
T  22912075 atggataaagattcttactttctcttgttcgaccctttataatttttggtgttgagagttttgagtttct--taagatccatccaaatcctcctccatc 22912171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 2e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 371 - 509
Target Start/End: Complemental strand, 4138996 - 4138858
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||||||||||||||||||| |||| ||| |||||||||| ||| |||||||||||||||||| ||||||  |||||||||||||||    
T  4138996 atggataaagattcttactttctcttgttcgaccctttaggaattttggtgttgagatttttgagtttcttgtaagatccatctcaatcctcctccatct 4138897  T
Q  471 taggaaaattagttgaaaaggaaaaatccctaattgtta 509  Q
    || || |||||||||| ||||||||||| ||||| ||||    
T  4138896 tatgacaattagttgagaaggaaaaatctctaatagtta 4138858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 371 - 509
Target Start/End: Complemental strand, 10187067 - 10186929
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||    
T  10187067 atggataaagattcttactttctcttgttcgaccctttaggaattttggtgttgagagttttgagtttcttgtaagatccatcctaatcctcctccatct 10186968  T
Q  471 taggaaaattagttgaaaaggaaaaatccctaattgtta 509  Q
    || |  |||||||||| |||| |||||| ||||| ||||    
T  10186967 tatggcaattagttgagaagggaaaatctctaatagtta 10186929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 371 - 504
Target Start/End: Original strand, 918414 - 918547
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||    
T  918414 atggataaagattcttaatttctcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctctatct 918513  T
Q  471 taggaaaattagttgaaaaggaaaaatccctaat 504  Q
    || || ||||||| || ||||||||||| |||||    
T  918514 tatgacaattagtcgagaaggaaaaatctctaat 918547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 371 - 497
Target Start/End: Complemental strand, 20172667 - 20172541
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||| ||||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||| |||| ||||||||||||||||    
T  20172667 atggataaagattcttagtttctcttgttcgaccctttaggatttttgatgttgagagttttgagtttcttgtaagcttcatcaaaatcctcctccatct 20172568  T
Q  471 taggaaaattagttgaaaaggaaaaat 497  Q
    || |  |||||||||| ||||||||||    
T  20172567 tatggcaattagttgagaaggaaaaat 20172541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 371 - 453
Target Start/End: Original strand, 11427590 - 11427672
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatc 453  Q
    |||||| | |||||||| ||| ||||||||||| |||  ||||||||| |||| |||||||||||||||||||||||||||||    
T  11427590 atggataaagattcttagtttatcttgttcgacccttcaggatttttgatgttgagagttttgagtttcttgtaagctccatc 11427672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 3e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 381 - 509
Target Start/End: Original strand, 13432883 - 13433010
Alignment:
Q  381 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 480  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  13432883 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 13432981  T
Q  481 agttgaaaaggaaaaatccctaattgtta 509  Q
    |||||| ||||||||||| ||||| ||||    
T  13432982 agttgagaaggaaaaatctctaatagtta 13433010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 371 - 504
Target Start/End: Complemental strand, 18883266 - 18883132
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttaga-gttttgagtttcttgtaagctccatccaaatcctcctccatc 469  Q
    |||||| | |||||||||||||| ||||||||| |||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  18883266 atggatgaagattcttactttcttttgttcgaccctttaggatttttggtgttgagaagttttgagtttcttgtaagatccatccaaatcctcgtccatc 18883167  T
Q  470 ttaggaaaattagttgaaaaggaaaaatccctaat 504  Q
    ||| |  |||||||||| ||||||||||| |||||    
T  18883166 ttatggcaattagttgagaaggaaaaatctctaat 18883132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 371 - 497
Target Start/End: Original strand, 16711541 - 16711666
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||| ||||||||||||||| |||| ||||||||| |||| ||||||| |||||| |||||||||||||||||||| | ||||||||    
T  16711541 atggataaagattcttagtttctcttgttcgacgctttaggatttttgatgttgagagtttcgagttt-ttgtaagctccatccaaatcttactccatct 16711639  T
Q  471 taggaaaattagttgaaaaggaaaaat 497  Q
    || || |||||||||| ||||||||||    
T  16711640 tatgacaattagttgagaaggaaaaat 16711666  T

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Target: chr3 (Bit Score: 77; Significance: 3e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 381 - 509
Target Start/End: Complemental strand, 52350438 - 52350311
Alignment:
Q  381 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 480  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||    
T  52350438 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccatcttatggcaatt 52350340  T
Q  481 agttgaaaaggaaaaatccctaattgtta 509  Q
    |||||| ||||||||||| ||||| ||||    
T  52350339 agttgagaaggaaaaatctctaatagtta 52350311  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 371 - 497
Target Start/End: Complemental strand, 26216025 - 26215899
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||||||| |||||||||||||||  ||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  26216025 atggataaagattcttagtttctcttgttcgaccatttaggatttttgatgttgagagttttgagtttcttgtaagctccatcaaaatcctcctccatct 26215926  T
Q  471 taggaaaattagttgaaaaggaaaaat 497  Q
    || |  |||||||||| ||||||||||    
T  26215925 tatggcaattagttgagaaggaaaaat 26215899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 371 - 509
Target Start/End: Complemental strand, 48266971 - 48266833
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | |||| ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| || | |||||| |||||||||||    
T  48266971 atggataaagattattactttctcttgttcgaccctttaggatttttggtgttgagagttttgagtttcttgtaagatcaaaccaaatgctcctccatct 48266872  T
Q  471 taggaaaattagttgaaaaggaaaaatccctaattgtta 509  Q
    || |  |||||||||| ||||||||||| ||||| ||||    
T  48266871 tatggcaattagttgagaaggaaaaatctctaatagtta 48266833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 371 - 509
Target Start/End: Complemental strand, 35871057 - 35870921
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | ||||||||||||||||| |||||| |||| |||||||||||||| ||||||  |||||||||||||| |||| ||||||||||||||||||    
T  35871057 atggataaagattcttactttctcttattcgaccctttaggatttttggtgttgagagtt--gagtttcttgtaagatccaaccaaatcctcctccatct 35870960  T
Q  471 taggaaaattagttgaaaaggaaaaatccctaattgtta 509  Q
    || |  |||||||||| ||||||||||| ||||| ||||    
T  35870959 tatggcaattagttgagaaggaaaaatctctaatagtta 35870921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 8e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 381 - 509
Target Start/End: Complemental strand, 36991753 - 36991626
Alignment:
Q  381 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 480  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| ||||| |  ||||    
T  36991753 attcttactttctcttattcgac-ctttaggatttttggtgttgagagttttgagtttcttgtaagatccaaccaaatcctcctccttcttatggcaatt 36991655  T
Q  481 agttgaaaaggaaaaatccctaattgtta 509  Q
    |||||| ||||||||||| ||||| ||||    
T  36991654 agttgagaaggaaaaatctctaatagtta 36991626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 381 - 509
Target Start/End: Original strand, 37301349 - 37301477
Alignment:
Q  381 attcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatcttaggaaaatt 480  Q
    ||||||||||| |||| |||||| ||||  ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| || ||||    
T  37301349 attcttactttatctttttcgaccctttctgatttttggtgttgagagttttgagtttcttgtaagatccatccaaatcctcctccatcttatgacaatt 37301448  T
Q  481 agttgaaaaggaaaaatccctaattgtta 509  Q
    || | | || |||||||| ||||| ||||    
T  37301449 agctaagaatgaaaaatctctaatagtta 37301477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 371 - 509
Target Start/End: Original strand, 21604556 - 21604693
Alignment:
Q  371 atggattatgattcttactttctcttgttcgacacttttggatttttggtgtttagagttttgagtttcttgtaagctccatccaaatcctcctccatct 470  Q
    |||||| | ||||||||||||||||||||||||  |||  ||||||||||||| ||||||||||||||   ||||| |||  |||||||||||||||||     
T  21604556 atggataaagattcttactttctcttgttcgaccgtttaagatttttggtgttgagagttttgagttttgagtaagatcctaccaaatcctcctccatc- 21604654  T
Q  471 taggaaaattagttgaaaaggaaaaatccctaattgtta 509  Q
    || |  |||||||||| ||||||||||| ||||| ||||    
T  21604655 tatggcaattagttgagaaggaaaaatctctaatagtta 21604693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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