View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3128-Insertion-10 (Length: 601)

Name: NF3128-Insertion-10
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3128-Insertion-10
NF3128-Insertion-10
[»] chr4 (1 HSPs)
chr4 (20-601)||(11880320-11880878)


Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 20 - 601
Target Start/End: Complemental strand, 11880878 - 11880320
Alignment:
Q  20 acgatgatatctccatcataaattaatggataataatatttccacttctactctannnnnnnattaaaaaattattctttgctttcaaatttctacgatg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  11880878 acgatgatatctccatcataaattaatggataataatatttccacttctactctatttttttattaaaaaattattctttgctttcaaatttctacgatg 11880779  T
Q  120 aaaacgaccacaagaataaaatttaagagaatttatcttctcacaaatcatccttatcatctaatgttattttctaactttgactgtaaaa--cagtgat 217  Q
    ||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||    
T  11880778 aaaacgaccag-----taaaatttaagagaatttatcttctcacaaatcatccttatcatctaatgttattttctgactttgactgtaaaaaacagtgat 11880684  T
Q  218 ggatagtgtcaaatacaattggcac-tgaccaaatgaaacattgcactatcattcagaagtgctttttctacaaacttcagtgcaaaatttattcaacag 316  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11880683 ggatagtgtcaaatacaattggcacctgaccaaatgaaacattgcactatcattcagaagtgctttttctacaaacttcagtgcaaaatttattcaacag 11880584  T
Q  317 aattgctcactgcatgcctaaccccagtatttatcacaattttctcagtcccgtatgaatagctcagttagcaacgacattacaatatacaggagtcggg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11880583 aattgctcactgcatgcctaaccccagtatttatcacaattttctgagtcccgtatgaatagctcagttagcaacgacattacaatatacaggagtcagg 11880484  T
Q  417 gttcgaacacagaatttctcacttattcaccttaaatgatgaatggccactggactaattggaatnnnnnnnttactcatgcagtaaataaatta-tcaa 515  Q
     |||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||||                    |||| |||||| ||||    
T  11880483 attcgaacacataacttctcacttattcaacttaaatgatgaatggccactagactaattggaa--------------------taaaaaaattactcaa 11880404  T
Q  516 gtataaatccttcaatcacaaagtcacaagataacaaaaacaataaacttttgttttacaaaagaacccaattgtgttcttcatcc 601  Q
      |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11880403 --ataaatccttcaatcacagagtcacaagataacaaaaacaataaacttttgttttacaaaagaacccaattgtgttcttcatcc 11880320  T

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