View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128-Insertion-11 (Length: 408)
Name: NF3128-Insertion-11
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128-Insertion-11 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 5996400 - 5996660
Alignment:
| Q |
8 |
atatcatcaatgctaagtttttatctatataaaacaaggaaataaggacaaaagtaaacacctcaataactgttagtaaattagttgaagaaaattgctc |
107 |
Q |
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| T |
5996400 |
atatcatcaatgctaagtttttatctatataaaacaaggaaataaggacaaaagtaaacacctcaataactgttagtaaattagttgaagaaaattgctc |
5996499 |
T |
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| Q |
108 |
tttagac----acttacggtttgatcagaagagtcttgaaccgactaaaatgcctctaccgatgattaattattgtttgcttctgaacggtagttaattg |
203 |
Q |
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| T |
5996500 |
tttagacagacacttacggtttgatcagaagaatcttgaaccgactaaaatgcctctaccgatgattaattattgtttgtttttgaacggtagttaattg |
5996599 |
T |
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| Q |
204 |
tccatccaaaaacggcagttaaatgtgagttgcagagaaaagcacagtttgcataatttaa |
264 |
Q |
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| T |
5996600 |
tccatccaaaaacggcagttaaatgtgagttgcagagaaaaggacagtttgcataatttaa |
5996660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 5996850 - 5996918
Alignment:
| Q |
257 |
taatttaaatgcaca--gatgacataaaactgtatgtctagatatctctaagtcaaaaccaccgtttaa |
323 |
Q |
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| T |
5996850 |
taatttaaatgcacaacgatgacataaaactgcatgtctagatatctctaagtcaaaaacaccgtttaa |
5996918 |
T |
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