View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128-Insertion-12 (Length: 557)
Name: NF3128-Insertion-12
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128-Insertion-12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 7 - 557
Target Start/End: Original strand, 47150955 - 47151502
Alignment:
| Q |
7 |
aatcacttctcaacaaagaacaacaaaacccactttacatctttcttcaaaccaaccctgttttggaaactgctcgaagagaatctattgaatggattct |
106 |
Q |
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| T |
47150955 |
aatcacttctcaacaaagaacaacaaaacccactttacatctttcttcaaaccaaccctgttttggaaactgctcgaagagaatctattgaatggattct |
47151054 |
T |
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| Q |
107 |
caaagtgagtgctcattactctttctcagctcttactgccgttcttgctgtcaactaccttgataggtttctattcagctttcgttttcagaatgagaag |
206 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47151055 |
caaagtgaatgctcattactctttctcagctcttacttccgttcttgctgtcaactaccttgataggtttctattcagctttcgttttcagaatgagaag |
47151154 |
T |
|
| Q |
207 |
ccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgtttca |
306 |
Q |
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| T |
47151155 |
ccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgtttca |
47151254 |
T |
|
| Q |
307 |
tcttaactcttgcaaagttgcaagaaacaaaaagaactaaactaatttgttttgaaattttgtttaggttgaagagagtagatacttgtttgaagcaaaa |
406 |
Q |
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| T |
47151255 |
tcttaactcttgcaaagttgcaagaaacaaaaagaactaaac---tttgttttgaaattttgtttaggttgaagagagtagatacttgtttgaagcaaaa |
47151351 |
T |
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| Q |
407 |
acgattaaaaagatggaaattttgatactttcaactcttggatggaagatgagtccagcaacacctctttcttttattgattttatcataagaagacttg |
506 |
Q |
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| T |
47151352 |
acgattaaaaagatggaaattttgatactttcaactcttggatggaagatgaatccagcaacacctctttcttttattgattttatcataagaagacttg |
47151451 |
T |
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| Q |
507 |
gattgaaagatcatctaatttgttgggagttccttaagagatgtgaaggtg |
557 |
Q |
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| T |
47151452 |
gattgaaagaccatctaatttgttgggagtttcttaagagatgtgaaggtg |
47151502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 94 - 303
Target Start/End: Complemental strand, 48851198 - 48850989
Alignment:
| Q |
94 |
ttgaatggattctcaaagtgagtgctcattactctttctcagctcttactgccgttcttgctgtcaactaccttgataggtttctattcagctttcgttt |
193 |
Q |
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| T |
48851198 |
ttgaatggatgcttaaagtcaatgctcattatggtttctctgctctcactgcaacacttgctgttaattatcttgataggtttcttctaagcttccattt |
48851099 |
T |
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| Q |
194 |
tcagaatgagaagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatctt |
293 |
Q |
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||| || |||||||||||||||| |||||||| |||||| |||| | ||| | ||||||||| | ||||| || || ||||||||| | |||| ||| |
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| T |
48851098 |
tcaaaaggagaagccatggatgattcagcttgttgctgttacttgcatctctttagctgctaaagttgaagaaactcaagttcctcttctcttagacctt |
48850999 |
T |
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| Q |
294 |
caagtatgtt |
303 |
Q |
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| T |
48850998 |
caagtatgtt |
48850989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 52794533 - 52794464
Alignment:
| Q |
204 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgt |
274 |
Q |
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| T |
52794533 |
aagccatggatcactcagattcctg-tgtttcttgtttgtctcttgctgctaaaatggaagaaacccatgt |
52794464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 204 - 303
Target Start/End: Original strand, 39337226 - 39337325
Alignment:
| Q |
204 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgtt |
303 |
Q |
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| T |
39337226 |
aagccttggatgactcagctcactgctgttgcttgtttgtctcttgctgctaaaatggaagaaacccatgtgccacttcttttggattttcaagtatgtt |
39337325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 23703200 - 23703270
Alignment:
| Q |
204 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgt |
274 |
Q |
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| T |
23703200 |
aagccatggatcactcaggttactgctgttgcttgtttgtctcttgctgctaaaatggaagaaacccatgt |
23703270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 55018597 - 55018667
Alignment:
| Q |
204 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgt |
274 |
Q |
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| T |
55018597 |
aagccatggatcactcagcttactgttgttgcttgtttgtctcttgctgctaaaatggaagaaacccatgt |
55018667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 302
Target Start/End: Complemental strand, 35785936 - 35785838
Alignment:
| Q |
204 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgt |
302 |
Q |
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| T |
35785936 |
aagccatggatcactcagattactgttgttgcttgtttgtctcttgctgctaaaatggaagaaatccatgtgccacttcttttggattttcaagtatgt |
35785838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 38157864 - 38157930
Alignment:
| Q |
208 |
catggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgt |
274 |
Q |
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||||||| ||||| ||| | | |||||||||| | ||||||||||||||||||||||| |||||||| |
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| T |
38157864 |
catggatcactcatcttactgttgttgcttgtttgtctcttgctgctaaaatggaagaaacccatgt |
38157930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 7107762 - 7107834
Alignment:
| Q |
230 |
tgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgt |
302 |
Q |
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| T |
7107762 |
tgttgcttgtttgtctcttgctgctaaaatggaagaaacccatgtgccacttcttttggattttcaagtatgt |
7107834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 302
Target Start/End: Original strand, 21143311 - 21143409
Alignment:
| Q |
204 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgt |
302 |
Q |
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||||||||||| |||||| || | | |||||||||| | ||||||||||||||||||||||| || ||||| || ||| | | ||| ||||||||||| |
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| T |
21143311 |
aagccatggatcactcagattactgttgttgcttgtttgtctcttgctgctaaaatggaagaaactcatgtgccacttcttttggattttcaagtatgt |
21143409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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