View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128-Insertion-13 (Length: 501)
Name: NF3128-Insertion-13
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128-Insertion-13 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 41728777 - 41728509
Alignment:
| Q |
7 |
ataaataagtaaaagaaaaacatggatgttgcattaatgtttatgttgtttcatgtatgtttaagaaattgtaacaccttaatctcaacaatattgtacc |
106 |
Q |
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| T |
41728777 |
ataaataagtaaaagaaaaacatggatgttgaattaatgtttatgttgtttcatgtatgtttaagaaattgtaacaccttaatctcaacaatattgtacc |
41728678 |
T |
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| Q |
107 |
tgtgaagcattgactcagacacaaacaccagacactataataaattgtataagaagggtcattgctacagagaagaaagaaaaataaaataccttttagt |
206 |
Q |
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| T |
41728677 |
tgtgaagcattgactcagacacaaacaccagacaccataataaattgtataagaagggtcggtgctacagagaagaaagaaaaataaaataccttttagt |
41728578 |
T |
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| Q |
207 |
gaggagaagaagatcaatggtttgtggtgaagaccgaagaagaatcaggatcaggaattcgaataccca |
275 |
Q |
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| T |
41728577 |
gaggagaagaagatcaatggtttgtggtgaagactgaagaagaatcaggatcaggaattcgaagaccca |
41728509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 393 - 501
Target Start/End: Complemental strand, 41728398 - 41728290
Alignment:
| Q |
393 |
gctgaaaatgaaagacctattagcaagggagaagagaagagtggaatgagaagcttcgatgtctaaaacaccgtcgtcattaaggaagcatttgaatatt |
492 |
Q |
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| T |
41728398 |
gctgaaaatgaaagacctattagcaagggagaagagaagagtggaatgagaagcttcgatgtctaaaacgccgtcgtcattaaggaagcatttgaatatt |
41728299 |
T |
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| Q |
493 |
tctattata |
501 |
Q |
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| T |
41728298 |
tctattata |
41728290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 407 - 488
Target Start/End: Complemental strand, 1310493 - 1310412
Alignment:
| Q |
407 |
acctattagcaagggagaagagaagagtggaatgagaagcttcgatgtctaaaacaccgtcgtcattaaggaagcatttgaa |
488 |
Q |
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| T |
1310493 |
acctattagctacggagaagagaacagtggaatcagaagcttcaatatccaaaacgtcgtcgtcataaaagaagcatttgaa |
1310412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 1310903 - 1310850
Alignment:
| Q |
41 |
taatgtttatgttgtttcatgtatgtttaagaaattgtaacaccttaatctcaa |
94 |
Q |
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| T |
1310903 |
taatgtttatgttgtttcatgaatgtttaaggaaatataacaccttaatctcaa |
1310850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 1310709 - 1310665
Alignment:
| Q |
194 |
aataccttttagtgaggagaagaagatcaatggtttgtggtgaag |
238 |
Q |
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| T |
1310709 |
aataccgtttagtaaggagaacaagatcaatggtttgtggtgaag |
1310665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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