View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128-Insertion-15 (Length: 421)
Name: NF3128-Insertion-15
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128-Insertion-15 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 421
Target Start/End: Complemental strand, 31200891 - 31200478
Alignment:
| Q |
8 |
gtaacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattaggttcaagtgtatgtcccgaatagtttttatacttatgcaaag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31200891 |
gtaacctcttcaaatgaagacactctccacccttttaatcattttgtgaagcaattaggttcaagtgtatgtctcgaatagtttttatacttatgcaaag |
31200792 |
T |
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| Q |
108 |
tcattaacaattcataatgttatcatcttaaatcctttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatc |
207 |
Q |
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| T |
31200791 |
tcatgaacaattcataatgttatcatcttaaatcatttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatc |
31200692 |
T |
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| Q |
208 |
ttatgtggaagtaactagtaagccgtgattaagtcataaccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaat |
307 |
Q |
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| T |
31200691 |
ttatgtggaagtaactagtaagtcgtgattaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaat |
31200592 |
T |
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| Q |
308 |
aatagcatcgaannnnnnnnnnaggtgatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagttt |
407 |
Q |
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| T |
31200591 |
aatagcatcgaattttttttttaggtgatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagttt |
31200492 |
T |
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| Q |
408 |
ttgtgatgtttttg |
421 |
Q |
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| T |
31200491 |
ttgtgatgtttttg |
31200478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 9 - 421
Target Start/End: Complemental strand, 31189083 - 31188671
Alignment:
| Q |
9 |
taacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattaggttcaagtgtatgtcccgaatagtttttatacttatgcaaagt |
108 |
Q |
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| T |
31189083 |
taacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagaaattaggttcaagtgtatgtctcgaatagtttttatacttatgcaaagt |
31188984 |
T |
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| Q |
109 |
cattaacaattcataatgttatcatcttaaatcctttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatct |
208 |
Q |
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||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31188983 |
catgaacaattcataatgttatcatcttaaatcatttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatct |
31188884 |
T |
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| Q |
209 |
tatgtggaagtaactagtaagccgtgattaagtcataaccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaata |
308 |
Q |
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| T |
31188883 |
tatgtggaagtaactagtaagtcgtgattaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaata |
31188784 |
T |
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| Q |
309 |
atagcatcgaannnnnnnnnnaggtgatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagtttt |
408 |
Q |
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| T |
31188783 |
atagcatcgaattttttttttaggtgatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagtttt |
31188684 |
T |
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| Q |
409 |
tgtgatgtttttg |
421 |
Q |
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| T |
31188683 |
tgtgatgtttttg |
31188671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 31170982 - 31170908
Alignment:
| Q |
163 |
tatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtgatt |
237 |
Q |
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| T |
31170982 |
tatgctacaaatggagaacaagctatactagaaaatgtttttattttatgtggaagtcactagaaagccgtgatt |
31170908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 31144869 - 31144770
Alignment:
| Q |
121 |
ataatgttatcatcttaa-atcctttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagt |
219 |
Q |
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|||||||||||||||| | | |||||||||||| |||||||| |||||||| ||||||||||| | ||||||||||||| ||||||||||| ||||||| |
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| T |
31144869 |
ataatgttatcatctttataacctttagaagtttgttgctgcatatgctac-aatggagaacatgttatactagaaaatatttttatcttatttggaagt |
31144771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 31145001 - 31144935
Alignment:
| Q |
9 |
taacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattaggttcaagtgt |
75 |
Q |
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||||| |||||||||| ||| ||||||||||||||||||||||||||||| ||| |||| |||||| |
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| T |
31145001 |
taaccacttcaaatgataacaatctccacccttttaatcatcttgtgaagctattgggtttaagtgt |
31144935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 31171394 - 31171328
Alignment:
| Q |
9 |
taacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattaggttcaagtgt |
75 |
Q |
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|||||| |||||||||||||| |||||| || ||||||| |||||| |||||||| |||||||||| |
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| T |
31171394 |
taaccttttcaaatgaagacaatctccatccctttaatcttcttgttaagcaattgagttcaagtgt |
31171328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 31225168 - 31225277
Alignment:
| Q |
116 |
aattcataatgttatcatcttaaatcctttagaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtgg |
215 |
Q |
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|||| ||||| ||| |||| || |||||||| ||||||| |||| || ||||| |||| | |||||||||||||| |||| | |||||||||||||| |
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| T |
31225168 |
aatttataattttaacatcatatatcctttataagttggcgactgcataagctacaaatgaaaaacaagctatactacaaaa--agtttatcttatgtgg |
31225265 |
T |
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| Q |
216 |
aagtaactagta |
227 |
Q |
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||| |||||||| |
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| T |
31225266 |
aagcaactagta |
31225277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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