View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3128-Insertion-16 (Length: 360)

Name: NF3128-Insertion-16
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3128-Insertion-16
NF3128-Insertion-16
[»] chr7 (1 HSPs)
chr7 (7-360)||(40506560-40506913)


Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 360
Target Start/End: Complemental strand, 40506913 - 40506560
Alignment:
Q  7 agaagttccagttgagccgaaggaagaacgaaattgcaatcttcttgattagctttgaaatggatattcacacacacatttcaatacccacaacttttat 106  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40506913 agaagttccagttgagccgaaggaagaacgaaatttcaatcttcttgattagctttgaaatggatattcacacacacatttcaatacccacaacttttat 40506814  T
Q  107 atcccatcgtttctcttcaccaacccaaactttatcatcctcttctttccattcctatttccccttcaaatttgtagtatgttccaaaagggacgatcaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40506813 atcccatcgtttctcttcaccaacccaaactttatcatcctcttctttccattcctatttccccttcaaatttgtagtatgttccaaaagggacgatcaa 40506714  T
Q  207 tctcaaacaaacgccgataacaatggtannnnnnnacaattactgtttttattcttcacttcagccagcatactacaagagaacttgatacatgcannnn 306  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  40506713 tctcaaacaaacgccgataacaatggtatttttctacaattactgtttttattcttcacttcagccagcatactacaagagaacttgatacatgcatttt 40506614  T
Q  307 nnncatttatgatatatgaaaagcatttcttcatttttatatgatcccttttta 360  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40506613 tttcatttatgatatatgaaaagcatttcttcatttttatatgatcccttttta 40506560  T

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