View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128-Insertion-18 (Length: 368)
Name: NF3128-Insertion-18
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128-Insertion-18 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 368
Target Start/End: Complemental strand, 2517740 - 2517380
Alignment:
| Q |
8 |
aattctgtgcagcagatttaagtatggatttgtgcacaatattgaattagcttaccaaatggtaaaaaattgatggcagtactggcgggaaaagttacta |
107 |
Q |
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| T |
2517740 |
aattatgtgcagcagattcaagtatggatttgtgcacaacattgaattagcttaccaaatggtaaaaaattgatggcagtactggcgggaaaagttacta |
2517641 |
T |
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| Q |
108 |
ctttagaggatctaaaccaattatggatgttctattcttacctgattttaatatcaaccttggtagagggatttggttaagttggagggtgtaggtgacg |
207 |
Q |
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| T |
2517640 |
ctttagaggatctaaaccaattatggatgttctattcttacctgattttaatatcaaccttggtggagagatttggttaagttggagggtgtaggtgacg |
2517541 |
T |
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| Q |
208 |
gtaattggttcggatcgggggtcgcgagaaagatggttgatggattgagtgcaggcatttggagggataggtggagatctgatattcctttttgtcatct |
307 |
Q |
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| T |
2517540 |
gtaattggttcaaatcgggggtcgtgagaaagatgggtgatggattgagtgcaggcttttggagggataggtggagatctgatattcctttttgtcatct |
2517441 |
T |
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| Q |
308 |
tttcccacgtttatttttaatctcaacccaaaaggattgtagtgtgggagaggtgtggaat |
368 |
Q |
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| T |
2517440 |
tttcccgcgtttatttttaatctcaacccaaaaggattgtagtgtgggagaggtgtggaat |
2517380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 2533007 - 2532886
Alignment:
| Q |
48 |
attgaattagcttaccaaatggtaaaaaa--ttgatggcagtactggcgggaaaagttactactttagaggatctaaaccaattatggatgttctattct |
145 |
Q |
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| T |
2533007 |
attgaattagctttccaaatggtaaaaaaaattgatggcaatactggcgggaaaagttactactttagatgatctaaa--acttatggatgttctattct |
2532910 |
T |
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| Q |
146 |
tacctgattttaatatcaaccttg |
169 |
Q |
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| T |
2532909 |
tacctgattttaatattaaccttg |
2532886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 2489604 - 2489533
Alignment:
| Q |
96 |
gaaaagttactactttagaggatctaaaccaattatggatgttctattcttacctgattttaatatcaaccttg |
169 |
Q |
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| T |
2489604 |
gaaaatttactacttcagatgatctaaactg--tatggatgttctattcttacctgattttaacatcaaccttg |
2489533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 2498506 - 2498469
Alignment:
| Q |
132 |
ggatgttctattcttacctgattttaatatcaaccttg |
169 |
Q |
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| T |
2498506 |
ggatgttctattcttacctgattttaatatcaaccttg |
2498469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 355
Target Start/End: Original strand, 16743828 - 16743918
Alignment:
| Q |
265 |
tttggagggataggtggagatctgatattcctttttgtcatcttttcccacgtttatttttaatctcaacccaaaaggattgtagtgtggg |
355 |
Q |
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| T |
16743828 |
tttggagggataggtggtgatctgatatttcgtttatgcatctcttcctgcgtttatttgtaatctcgaaccatatgaattgtagtgtggg |
16743918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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