View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128-Insertion-2 (Length: 833)
Name: NF3128-Insertion-2
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 562; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 8 - 624
Target Start/End: Complemental strand, 8316621 - 8315998
Alignment:
| Q |
8 |
ggacatacagtcaatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaataagataacaagagggag |
107 |
Q |
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| T |
8316621 |
ggacatacagtcaatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaataagataacaagagggag |
8316522 |
T |
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| Q |
108 |
aaaactaaccttatcatagtcatagcaataatcagtgcaaatttcttcacaataagaacacaatggattataattgtatgataaatcaatatcatctaag |
207 |
Q |
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| T |
8316521 |
aaaactaaccttatcatagtcatagcaataatcagtgcaaatttcttcgcaataagaacacaatggattataattgtatgataaatcaatatcatctaag |
8316422 |
T |
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| Q |
208 |
tcgagcttggtaatggatgatgtccatcgattcatccagctcttggacaacgcacaagtccgaacaacatcttttgtagggaggaaagacagaacgcgat |
307 |
Q |
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| T |
8316421 |
tcgagcttggtgatggatgatgtccatcgattcatccatctcttggacaacacacaagtccgaacaacatcttttgtagggaggaaagacagaacgcgat |
8316322 |
T |
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| Q |
308 |
ttataagtgattcaggtagcttgctgttgatcgtgtcttcttcaattacacttgccatttgagtactcttgtgaaccttacttgaaccagcctccatgtt |
407 |
Q |
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| T |
8316321 |
ttataagtgattcaggtagcttgctgttgatcgtgtcttcttcaattacacttgccatttgagtactcttgtgaaccttacttgaaccagcctccatgtt |
8316222 |
T |
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| Q |
408 |
acttactgcaatttcaataccagttagtataagtcctccttggtatctttgaaacttaaattacatatcttgagatcatttgcatattatgttctacaag |
507 |
Q |
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| T |
8316221 |
acttactgcaatttcaataccagttagtataagtcctccttggtatctttgaaacttaaattacatatcttgagatcatttgcatattatgttctacaag |
8316122 |
T |
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| Q |
508 |
ataaactcctgtattaggaatgttcaggcgttatatcatattatcagtaatgtccatatcgtgtctgg-------tgtcgctgaatcatagtctaatata |
600 |
Q |
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| T |
8316121 |
ataaactcatgtattaggaatgttcaggctttatatcatattatcagtaatgtccatgtcgtgtctggtgtctggtgtcggtgaatcatagtctaatata |
8316022 |
T |
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| Q |
601 |
ataatcaacacatgctatgatggt |
624 |
Q |
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| T |
8316021 |
ataatcaacacatgctgtgatggt |
8315998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 709 - 831
Target Start/End: Complemental strand, 8315913 - 8315792
Alignment:
| Q |
709 |
ctatagaatgattgacaagtcaataatacctgatcggtcatatctcgttcagaatttgagactgtgacgccgcagggttcaaacttgagactcttttgtt |
808 |
Q |
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| T |
8315913 |
ctatagaatgattgacaagtcaataatacctgatcggtcat-tctcgttcagaatttgagactgtgacgccgcagggttcaaacttgagactcttttgtt |
8315815 |
T |
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| Q |
809 |
tttaccaaattcattttgtaaaa |
831 |
Q |
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| T |
8315814 |
tttgccaaattcattttgtaaaa |
8315792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 8359390 - 8359447
Alignment:
| Q |
241 |
atccagctcttggacaacgcacaagtccgaacaacatcttttgtagggaggaaagaca |
298 |
Q |
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| T |
8359390 |
atccatctcttggacaacacacaagttcgaacagcatcttttgtcggaagtaaagaca |
8359447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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