View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3128-Insertion-21 (Length: 213)

Name: NF3128-Insertion-21
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3128-Insertion-21
NF3128-Insertion-21
[»] chr2 (4 HSPs)
chr2 (55-138)||(17179785-17179868)
chr2 (140-212)||(17179970-17180042)
chr2 (8-53)||(17179703-17179748)
chr2 (140-172)||(17188359-17188391)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 17179785 - 17179868
Alignment:
Q  55 ttactccatgtctagtctatactttaatgaattgtgctgaactttttaaaatcatttttgttagacacgagcttagttaaatta 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17179785 ttactccatgtctagtctatactttaatgaattgtgctgaactttttaaaatcatttttgttacacacgagcttagttaaatta 17179868  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 17179970 - 17180042
Alignment:
Q  140 acgagaaggatttaattcactaataagtattttcaactaaacactgtgtattgatacattctctccgtaccga 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17179970 acgagaaggatttaattcactaataagtattttcaactaaacactgtgtattgatacattctctccgtaccga 17180042  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 17179703 - 17179748
Alignment:
Q  8 taggtgacgtccacaaagaccagacacatgcacatgtttattgtat 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  17179703 taggtgacgtccacaaagaccagacacatgcacatgtttattgtat 17179748  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 17188359 - 17188391
Alignment:
Q  140 acgagaaggatttaattcactaataagtatttt 172  Q
    ||||||||||||| |||||||||||||||||||    
T  17188359 acgagaaggattttattcactaataagtatttt 17188391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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