View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128-Insertion-22 (Length: 230)
Name: NF3128-Insertion-22
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128-Insertion-22 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 16969073 - 16969285
Alignment:
| Q |
15 |
catcagcaacatcaaaatcagaaccattagagtgttcttcatcactttcaccatactcatctgaatgtattgaaatagggttgtcttcatcaccaacaaa |
114 |
Q |
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| T |
16969073 |
catcagcagcatcagaatcagaaccat---agtgttcttcatcactttcaccatactcatctgaatgtattgaaatagggttgtcttcatcaccaacaaa |
16969169 |
T |
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| Q |
115 |
gttttcatcacattgctgcactgacccttcttcatcttgatcatcataatcatcatgttcaatggaaattaccttggcaccttgaggaaccacaaaaggt |
214 |
Q |
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| T |
16969170 |
gttttcatcacattgctgcactgacccttcttcatcttgaccaccataatcatcatgttcaatggaaattaccttggcaccttcaggaaccacaaaaggt |
16969269 |
T |
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| Q |
215 |
tcttcatttagcatca |
230 |
Q |
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| T |
16969270 |
tcttcatttagcatca |
16969285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 17008518 - 17008580
Alignment:
| Q |
43 |
agagtgttcttcatcactttcaccatactcatctgaatgtattgaaatagggttgtcttcatc |
105 |
Q |
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| T |
17008518 |
agagtgttcttcatcactctcactatactcatcagaacatattgaaatcgggttatcttcatc |
17008580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 10601113 - 10601061
Alignment:
| Q |
44 |
gagtgttcttcatcactttcaccatactcatctgaatgtattgaaatagggtt |
96 |
Q |
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| T |
10601113 |
gagtgtttttcatcactttcaccatattcatctgaaattattgtaatcgggtt |
10601061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 35262515 - 35262481
Alignment:
| Q |
45 |
agtgttcttcatcactttcaccatactcatctgaa |
79 |
Q |
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| T |
35262515 |
agtgttcttcatcactttcaccatactcatctgaa |
35262481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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