View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128-Insertion-25 (Length: 298)
Name: NF3128-Insertion-25
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128-Insertion-25 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 294
Target Start/End: Original strand, 10167879 - 10168164
Alignment:
| Q |
8 |
tgagactccctcttttggttcatttcttaaaacctacaaatcattaactattaactctcattgttttcattttctgggcttaagaaatttgggggaaatt |
107 |
Q |
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| T |
10167879 |
tgagactccctcttttggttcacttcttaaaacctacaaatcattaactattaactctcattgttttcattttctgggcttaagaaatttgggggaaatt |
10167978 |
T |
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| Q |
108 |
gaaattgggnnnnnnnnn-ggttaggaatttggagggtttgattttaggatgcattgatgaagaaattgaattttggtgttgattttagggttgattttc |
206 |
Q |
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| T |
10167979 |
gaaattgggaaaaaaaaaaggttagggatttggagggtttgattttaggatgcattgatgaagaaattgaattttggtgttgattttagggttgattttc |
10168078 |
T |
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| Q |
207 |
agatctgagttggattctgaaagtggaatatgatgaagggtaacaacaactgtaaaataaaaatcatcatgaatgaaggtgcagctgc |
294 |
Q |
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| T |
10168079 |
atatctgagttggattctgaaagtggaatctgttgaagggtaacaacaactgtaaa--aaaaatcatcatgaatgaaggtgcagctgc |
10168164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 42713768 - 42713811
Alignment:
| Q |
145 |
ttgattttaggatgcattgatgaagaaattgaattttggtgttg |
188 |
Q |
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| T |
42713768 |
ttgattttaggatgaattggtgaataaattgaattttggtgttg |
42713811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 24317471 - 24317573
Alignment:
| Q |
12 |
actccctcttttggttcatttcttaaaacctacaaatcattaactattaactctcattgttttcattttctgggcttaagaaatttgggggaaattgaaa |
111 |
Q |
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| T |
24317471 |
actccatcttttggttcaattcttaaaacccataaatccttaactcttaactttaattgttttcatgtactgggtttaagaaatttgggagaaattgaaa |
24317570 |
T |
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| Q |
112 |
ttg |
114 |
Q |
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||| |
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| T |
24317571 |
ttg |
24317573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 25438364 - 25438460
Alignment:
| Q |
20 |
ttttggttcatttcttaaaacctacaaatcattaactattaactctcattgttttcattttctgggcttaagaaatttgggggaaattgaaattggg |
116 |
Q |
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| T |
25438364 |
ttttggtttaattcttaaaacctataaatcggtaactcttaactttaattgttttcatttactgtgtttaagaaatttgggaaaaattgaaattggg |
25438460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 26269032 - 26268976
Alignment:
| Q |
13 |
ctccctcttttggttcatttcttaaaacctacaaatcattaactattaactctcatt |
69 |
Q |
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| T |
26269032 |
ctccctcttttggttcacatctaaaaacctacaaatccttaactctcaactctcatt |
26268976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 5410933 - 5410837
Alignment:
| Q |
20 |
ttttggttcatttcttaaaacctacaaatcattaactattaactctcattgttttcattttctgggcttaagaaatttgggggaaattgaaattggg |
116 |
Q |
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| T |
5410933 |
ttttggtttaattcttaaaacccataaatcggtaactcttaactttaattgttttcatttactgtgtttaagaaatttgggaaaaattgaaattggg |
5410837 |
T |
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