View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128-Insertion-27 (Length: 240)
Name: NF3128-Insertion-27
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128-Insertion-27 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 47609580 - 47609349
Alignment:
| Q |
8 |
ctaatgcagcatcctcatctcgattattcttatttgaatatcaggtaacaattaaaatcatttaagtcgttaaactcttctattaacatcattaaggaaa |
107 |
Q |
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| T |
47609580 |
ctaatgcagcatcctcatctcgattattcttatttgaatataaggtaacaatgaaaatcatttaagttgttaaactcttctattaacatcattaaggaaa |
47609481 |
T |
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| Q |
108 |
agtaaagacagatgaactaagcttttctcagatattttacttgtgatttataacctcatttattgaatttttgtttgataaattctctgtataattgagc |
207 |
Q |
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| T |
47609480 |
agtaaagacagatgaactaagctttgctcggatattttacttgtgatttataacctcatttattgaatttttgtttgataaattctctgtataattgagc |
47609381 |
T |
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| Q |
208 |
tttgggtcagttctattcaaaatgtgcttgca |
239 |
Q |
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| T |
47609380 |
tttgggttagttctattcaaaatgtgcttgca |
47609349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 47604893 - 47604851
Alignment:
| Q |
197 |
tataattgagctttgggtcagttctattcaaaatgtgcttgca |
239 |
Q |
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| T |
47604893 |
tataattgagctttgggtcagttctattcaaaatgtgcttgca |
47604851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 19930102 - 19930179
Alignment:
| Q |
119 |
atgaactaagcttttctcagatattttact--tgtgatttataacct-catttattgaatttttgtttgataaattct |
193 |
Q |
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| T |
19930102 |
atgaactaatctttgctaagatattttactcttatgatatataaccttcatttattgagtttttgtttgattaattct |
19930179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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