View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3128-Insertion-3 (Length: 827)

Name: NF3128-Insertion-3
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3128-Insertion-3
NF3128-Insertion-3
[»] chr2 (13 HSPs)
chr2 (8-827)||(33519575-33520392)
chr2 (258-827)||(33495662-33496228)
chr2 (10-168)||(33496221-33496379)
chr2 (169-233)||(20539719-20539783)
chr2 (169-233)||(23717977-23718040)
chr2 (169-233)||(24105649-24105712)
chr2 (168-233)||(19536443-19536508)
chr2 (170-233)||(21624217-21624280)
chr2 (169-233)||(21091674-21091737)
chr2 (170-233)||(38117204-38117261)
chr2 (179-229)||(4142889-4142939)
chr2 (168-198)||(37419703-37419733)
chr2 (168-233)||(6940204-6940269)
[»] chr5 (9 HSPs)
chr5 (169-233)||(19820439-19820503)
chr5 (167-233)||(22013362-22013428)
chr5 (169-233)||(2436878-2436936)
chr5 (169-233)||(37328889-37328953)
chr5 (169-233)||(42469171-42469235)
chr5 (180-233)||(22299525-22299578)
chr5 (178-233)||(15382436-15382491)
chr5 (178-233)||(21522709-21522764)
chr5 (178-233)||(21533275-21533330)
[»] chr7 (11 HSPs)
chr7 (169-233)||(27944991-27945055)
chr7 (168-233)||(24105628-24105692)
chr7 (170-233)||(49107773-49107835)
chr7 (169-233)||(21864756-21864820)
chr7 (169-233)||(43027514-43027578)
chr7 (170-233)||(598160-598222)
chr7 (178-233)||(11061121-11061176)
chr7 (178-233)||(24339601-24339656)
chr7 (178-233)||(26733263-26733318)
chr7 (184-229)||(11722147-11722192)
chr7 (184-233)||(17851396-17851445)
[»] scaffold0223 (1 HSPs)
scaffold0223 (169-233)||(20122-20186)
[»] chr6 (16 HSPs)
chr6 (169-233)||(853904-853968)
chr6 (169-233)||(8365564-8365628)
chr6 (171-233)||(12696277-12696338)
chr6 (169-233)||(3398569-3398633)
chr6 (169-233)||(4877890-4877956)
chr6 (178-233)||(9027137-9027192)
chr6 (184-238)||(5000666-5000720)
chr6 (171-233)||(9658832-9658893)
chr6 (169-233)||(6389693-6389757)
chr6 (168-233)||(10294050-10294121)
chr6 (169-233)||(30866189-30866253)
chr6 (178-233)||(7938075-7938130)
chr6 (178-233)||(16766656-16766711)
chr6 (184-233)||(7977875-7977924)
chr6 (184-233)||(9107415-9107464)
chr6 (168-201)||(10649277-10649310)
[»] chr3 (12 HSPs)
chr3 (169-233)||(8842280-8842344)
chr3 (166-233)||(8383204-8383271)
chr3 (168-233)||(4466645-4466710)
chr3 (178-231)||(4991014-4991067)
chr3 (170-223)||(8587076-8587129)
chr3 (169-233)||(55401025-55401089)
chr3 (170-233)||(32429425-32429488)
chr3 (168-230)||(25064858-25064920)
chr3 (184-233)||(10335331-10335380)
chr3 (184-233)||(24205086-24205135)
chr3 (184-233)||(28917966-28918015)
chr3 (168-201)||(34910278-34910311)
[»] chr1 (13 HSPs)
chr1 (184-233)||(40917716-40917765)
chr1 (185-233)||(398810-398858)
chr1 (169-233)||(5927385-5927449)
chr1 (168-215)||(39130830-39130877)
chr1 (180-233)||(48040507-48040560)
chr1 (168-224)||(9630634-9630690)
chr1 (177-233)||(10572634-10572690)
chr1 (169-201)||(35702659-35702691)
chr1 (178-233)||(38503279-38503334)
chr1 (187-233)||(20157395-20157441)
chr1 (184-233)||(2896166-2896215)
chr1 (188-233)||(34298405-34298450)
chr1 (168-229)||(34315662-34315722)
[»] scaffold0306 (1 HSPs)
scaffold0306 (169-233)||(13350-13414)
[»] scaffold0152 (1 HSPs)
scaffold0152 (169-233)||(21913-21977)
[»] chr8 (9 HSPs)
chr8 (169-233)||(126394-126457)
chr8 (169-233)||(25192392-25192456)
chr8 (167-233)||(13437009-13437075)
chr8 (169-211)||(40332155-40332197)
chr8 (169-233)||(28642358-28642422)
chr8 (178-233)||(22651935-22651990)
chr8 (178-233)||(24362247-24362302)
chr8 (186-233)||(29510349-29510396)
chr8 (168-198)||(22595949-22595979)
[»] scaffold0053 (1 HSPs)
scaffold0053 (178-233)||(8757-8812)
[»] scaffold0018 (1 HSPs)
scaffold0018 (172-233)||(178864-178925)
[»] scaffold0003 (1 HSPs)
scaffold0003 (184-233)||(241559-241608)
[»] scaffold0171 (1 HSPs)
scaffold0171 (168-232)||(23370-23433)
[»] chr4 (4 HSPs)
chr4 (178-233)||(23293031-23293086)
chr4 (169-198)||(7251701-7251730)
chr4 (170-215)||(7670632-7670677)
chr4 (168-197)||(23700420-23700449)
[»] scaffold0019 (1 HSPs)
scaffold0019 (168-233)||(71678-71737)
[»] scaffold0361 (1 HSPs)
scaffold0361 (170-199)||(14498-14527)
[»] scaffold0007 (1 HSPs)
scaffold0007 (184-233)||(225313-225362)


Alignment Details
Target: chr2 (Bit Score: 720; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 8 - 827
Target Start/End: Original strand, 33519575 - 33520392
Alignment:
Q  8 gggctctctatgccaaggaatgctacctctcaacttgccctctcgaagcagctcgtccaataaaaggctttttgcaaacaacaggaatgagagatggcat 107  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  33519575 gggctctctatgccaaggattgctacctctctacttgccctctcgaagcagctcgtccaataaaaggctttttgcaaacaactgggatgagagatggcat 33519674  T
Q  108 tccaattggtgatcaggtactcatatgtagtccaactgttcttgtcattgtgttatatggtctatgaagcacggatacggacaccggacacgacgcggat 207  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33519675 tccaattggtgatcaggtactcatatgtagtccaactgtttttgtcattgtgttatatggtctatgaagcacggatacggacaccggacacgacgcggat 33519774  T
Q  208 actgacacaccgacaccgctaataatccgaggagtatccgtgcttcatagtatatggttataacttgtaagtaatttgtcaattaatgtttgataatgga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33519775 actgacacaccgacaccgctaataatccgaggagtatccgtgcttcatagtatatggttataacttgtaagtaatttgtcaattaatgtttgataatgga 33519874  T
Q  308 nnnnnnnaaagattgaggaatggctattatttattaaattgtgatattagtggtcaatttacaactgtcactgataacatttgaactttatgccttgaga 407  Q
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33519875 tttttttaaagattgaggaatggctattatttattaaattgtgacattagtggtcaatttacaactgtcactgataacatttgaactttatgccttgaga 33519974  T
Q  408 ttacacggtctggctcttaccagtatgctgagacctcatgaacaattatttgataatcggttatgattgtaataaacataaatattgatatgatttcctt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33519975 ttacacggtctggctcttaccagtatgctgagacctcatgaacaattatttgataatcggttatgattgtaatgaacataaatattgatatgatttcctt 33520074  T
Q  508 tattttgtgcagacaggaatgaaatggttctttgtagttccaaagggcatggagaatattgtaggctacataaagataaaatatcataacatgcccatgt 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  33520075 tattttgtgcagacaggaatgaaatggttctttgtagttccaaagggcatggagaagattgtagactacataaagataaaatatcataacatgcccatgt 33520174  T
Q  608 atattacagaaaatggtgcgtgaatactcaataacattatatgatctcattannnnnnnnnatatgtttttgcttgatcacttgtgtgatattaaacact 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||| |||||||    
T  33520175 atattacagaaaatggtgcgtgaatactcaataacattatatgatctcatt--ttttttttatatgtttttgcttgatcacttgtgtgatatcaaacact 33520272  T
Q  708 tcaatatgaattaagagataaagaaaggagtgactatttgaaggtaggtttttggtatgtaaatttgggctggagttatgaattggttaatatatcatgg 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33520273 tcaatatgaattaagagataaagaaaggagtgactatttgaaggtagttttttggtatgtaaatttgggctggagttatgaattggttaatatatcatgg 33520372  T
Q  808 atgactgctcaaaatttgtt 827  Q
    ||||||||||||||||||||    
T  33520373 atgactgctcaaaatttgtt 33520392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 258 - 827
Target Start/End: Complemental strand, 33496228 - 33495662
Alignment:
Q  258 tatatggttataacttgtaagtaatttgtcaattaatgtttgataatggannnnnnnaaagattgaggaatggctattatttattaaattgtgatattag 357  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||       || |||||  |||||  ||||||||| ||||  |||| | ||     
T  33496228 tatatggttataacttgcaagtaatttgtcaattaatgtttgataatggatttttttaaggattggagaatgaatattatttagtaaa--gtgacactaa 33496131  T
Q  358 tggtcaatttacaactgtcactgataacatttgaactttatgccttgagattacacggtctggctcttaccagtatgctgagacctcatgaacaattatt 457  Q
    | |||| ||||||||||||| |||||| |||||||||| ||| |||||| ||||||||||  |||||||||  |  ||| | | ||||||||||||||||    
T  33496130 ttgtcattttacaactgtcattgataagatttgaacttcatgtcttgaggttacacggtcaagctcttaccgttgagcttacatctcatgaacaattatt 33496031  T
Q  458 tgataatcggttatgattgtaataaacataaatattgatatgatttcctttattttgtgcagacaggaatgaaatggttctttgtagttccaaagggcat 557  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||| ||| ||| | |||||||||||||  | |||||||||| ||||||||||||||    
T  33496030 tgataatcggttacgattgtaatgaacataaatattgatatgatttcttttgtttagagcagacaggaatgccaaggttctttgtggttccaaagggcat 33495931  T
Q  558 ggagaatattgtaggctacataaagataaaatatcataacatgcccatgtatattacagaaaatggtgcgtgaatactcaataacattatatgatctcat 657  Q
    |||||| ||||||| |||||||||||||||||| || ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33495930 ggagaagattgtagactacataaagataaaataccaaaacctgcccatgtatattacagaaaatggtgtgtgaatactcaataacattatatgatctcat 33495831  T
Q  658 tannnnnnnnnatatgtttttgcttgatcacttgtgtgatattaaacacttcaatatgaattaagagataaagaaaggagtgactatttgaaggtaggtt 757  Q
    |          |||||||||||||||||||||||| | |||| |||||||| |||||| |||| |||| |||||||||||||||| ||||||||| | ||    
T  33495830 t--ttctttttatatgtttttgcttgatcacttgtttaatatcaaacactttaatatgcattatgagacaaagaaaggagtgactctttgaaggtggttt 33495733  T
Q  758 tttggtatgtaaatttggg-ctggagttatgaattggttaatatatcatggatgactgctcaaaatttgtt 827  Q
    |||| ||||||||||||||  ||||  | ||||||||||||||||| ||||||| ||   |||||||||||    
T  33495732 tttgttatgtaaatttgggtatggaagtttgaattggttaatatatgatggatggctatacaaaatttgtt 33495662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 33496379 - 33496221
Alignment:
Q  10 gctctctatgccaaggaatgctacctctcaacttgccctctcgaagcagctcgtccaataaaaggctttttgcaaacaacaggaatgagagatggcattc 109  Q
    ||||||||||||||||| ||||||||||| ||||| || ||||| |||||||||||||||| ||||||| || ||||||| || ||||||||||||||||    
T  33496379 gctctctatgccaaggattgctacctctctacttgtccactcgaggcagctcgtccaataagaggctttctggaaacaactgggatgagagatggcattc 33496280  T
Q  110 caattggtgatcaggtactcatatgtagtccaactgttcttgtcattgtgttatatggt 168  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||    
T  33496279 caattggtgatcaggtactcgtatgtagtccaactgctcttgtcattatgttatatggt 33496221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 20539783 - 20539719
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||||||  |||||| |||||||||    
T  20539783 ctatgaagcacggatacggacactggacacgacacggacactgacacgtcgacacagctaataat 20539719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 23717977 - 23718040
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||| ||||| ||||| ||| |||| ||||||||||||||||||||||||||    
T  23717977 ctatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataat 23718040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 24105649 - 24105712
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||| ||||| ||||| ||| |||| ||||||||||||||||||||||||||    
T  24105649 ctatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataat 24105712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 19536508 - 19536443
Alignment:
Q  168 tctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||| ||||||||||||||||||||| |||| | |||||| |||||||  ||||||||    
T  19536508 tctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacaactaataat 19536443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 21624217 - 21624280
Alignment:
Q  170 tatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||| ||||||||||||||| ||||||| | || |||||||| ||||||| |||||||||    
T  21624217 tatgaagcccggatacggacaccgaacacgacacagacactgacacgccgacacagctaataat 21624280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 21091674 - 21091737
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||  |||| |||||| |  |||| ||||||||||||||||||||||||||    
T  21091674 ctatgaagcacggatacaaacac-ggacacaagacggacactgacacaccgacaccgctaataat 21091737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 38117261 - 38117204
Alignment:
Q  170 tatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||||||||||||||||||      |||||||| ||||||| |||||||||    
T  38117261 tatgaagcacggatacggacaccggacacgac------actgacacgccgacacagctaataat 38117204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 4142939 - 4142889
Alignment:
Q  179 cggatacggacaccggacacgacgcggatactgacacaccgacaccgctaa 229  Q
    ||||||||||||||| ||||||| |||| |||||||| |||||||| ||||    
T  4142939 cggatacggacaccgaacacgacccggacactgacacgccgacaccactaa 4142889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 198
Target Start/End: Original strand, 37419703 - 37419733
Alignment:
Q  168 tctatgaagcacggatacggacaccggacac 198  Q
    |||||||||||||||||||||||||||||||    
T  37419703 tctatgaagcacggatacggacaccggacac 37419733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 6940204 - 6940269
Alignment:
Q  168 tctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||| |||||||||||||| |  | ||||| |||| |||||||| ||||||| |||||||||    
T  6940204 tctatgaaacacggatacggacatcaaatacgacacggacactgacacgccgacacagctaataat 6940269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 19820503 - 19820439
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataat 19820439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 22013362 - 22013428
Alignment:
Q  167 gtctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| |||||||||    
T  22013362 gtctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataat 22013428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 2436878 - 2436936
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||||||||||||||||||      |||||||| |||||||||||||||||    
T  2436878 ctatgaagcacggatacggacaccggacacgac------actgacacgccgacaccgctaataat 2436936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 37328953 - 37328889
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||| |||||||||| ||||||| |||| ||||| |||||||||| || ||||||    
T  37328953 ctatgaagcacggacacggacaccgaacacgacacggacactgatacaccgacacagcaaataat 37328889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 42469171 - 42469235
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||| |||||||||| ||||||| |||||| |||||| ||||||| | |||||||    
T  42469171 ctatgaagcacggacacggacaccgaacacgacacggataatgacacgccgacacggataataat 42469235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 22299578 - 22299525
Alignment:
Q  180 ggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||| |||||||||| ||||| |||||| |||||||||||||| |||||||||    
T  22299578 ggatatggacaccggatacgacacggatattgacacaccgacacagctaataat 22299525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 15382436 - 15382491
Alignment:
Q  178 acggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||| |||||||||||||||||| |||| | |||||| ||||||| |||||||||    
T  15382436 acggacacggacaccggacacgacacggacaatgacacgccgacacagctaataat 15382491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 21522709 - 21522764
Alignment:
Q  178 acggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||| |||| ||||||||||||| |||| |||||||| ||||||| |||||||||    
T  21522709 acggacacggtcaccggacacgacacggacactgacacgccgacacagctaataat 21522764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 21533275 - 21533330
Alignment:
Q  178 acggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||| |||| ||||||||||||| |||| |||||||| ||||||| |||||||||    
T  21533275 acggacacggtcaccggacacgacacggacactgacacgccgacacagctaataat 21533330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 27944991 - 27945055
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataat 27945055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 24105628 - 24105692
Alignment:
Q  168 tctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||||||| | |||||||||| |||| |||||||| ||||||| |||||||||    
T  24105628 tctatgaagcacggatacggata-cggacacgacacggacactgacacgccgacacagctaataat 24105692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 49107773 - 49107835
Alignment:
Q  170 tatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||| ||||||||||||||  ||||||||| ||||  |||||||||||||||||||||||||    
T  49107773 tatgaaacacggatacggacaa-ggacacgacacggactctgacacaccgacaccgctaataat 49107835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 21864756 - 21864820
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||  ||| |||||||||| |||| || ||||||| ||||| |||||||||    
T  21864756 ctatgaagcacggatacacacatcggacacgacacggacacggacacacggacacagctaataat 21864820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 43027578 - 43027514
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||| ||||||| ||||||||| |||| ||||||||  |||| | |||||||||    
T  43027578 ctatgaagcacggatgcggacactggacacgacacggacactgacacggcgacccagctaataat 43027514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 598160 - 598222
Alignment:
Q  170 tatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||| | ||||||||| |||| ||| |||| ||||||||| ||||||||||||||||    
T  598160 tatgaagcacg-acacggacaccagacatgacacggacactgacacatcgacaccgctaataat 598222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 11061176 - 11061121
Alignment:
Q  178 acggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||| ||||||| |||| ||||| |||| |||||||||||||||| |||||||||    
T  11061176 acggacacggacatcggatacgacacggacactgacacaccgacacagctaataat 11061121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 24339601 - 24339656
Alignment:
Q  178 acggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||||||||||  ||| | |||||| ||||||| |||||||||    
T  24339601 acggatacggacaccggacacgacatggacattgacacgccgacacagctaataat 24339656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 26733263 - 26733318
Alignment:
Q  178 acggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||| |||||| |||||||| |||| ||||||||  ||||||||||||||||    
T  26733263 acggataccgacaccagacacgacacggacactgacacgtcgacaccgctaataat 26733318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 11722192 - 11722147
Alignment:
Q  184 acggacaccggacacgacgcggatactgacacaccgacaccgctaa 229  Q
    ||||| |||||||||||| |||| |||||||| |||||||||||||    
T  11722192 acggataccggacacgacacggacactgacacgccgacaccgctaa 11722147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 17851396 - 17851445
Alignment:
Q  184 acggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||||  |||||| |||||| ||| ||||||||||||    
T  17851396 acggacaccggacacgacatggataccgacacatcgataccgctaataat 17851445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 20122 - 20186
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||| ||||||||||||||||||||| |||| | |||||| ||||||| |||||||||    
T  20122 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataat 20186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 853968 - 853904
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||| ||||||||||||||||||||||||| ||||| ||||||| |||||||  ||||||||    
T  853968 ctatgaatcacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataat 853904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 8365628 - 8365564
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||||||||| |||||||| |||| |||||||| |||||||  ||||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataat 8365564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 12696277 - 12696338
Alignment:
Q  171 atgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||||| |||||||||| |||| |||||||| ||||||| |||||||||    
T  12696277 atgaagcacggatacggaca-cggacacgacacggacactgacacgccgacacagctaataat 12696338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 3398569 - 3398633
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||| ||||||||||| || ||||||| |||| |||||||| ||||||| |||||||||    
T  3398569 ctatgaagcatggatacggacatcgaacacgacacggacactgacacgccgacacagctaataat 3398633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 4877890 - 4877956
Alignment:
Q  169 ctatgaagcacggatacggacac--cggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||| |||||||||||  || ||||||| |||||| |||||||||||||| |||||||||    
T  4877890 ctatgaagcacagatacggacacgccgaacacgacacggatagtgacacaccgacacagctaataat 4877956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 9027137 - 9027192
Alignment:
Q  178 acggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||| |||||| ||||||||||| |||| |||||||| |||||||||||||||||    
T  9027137 acggacacggactccggacacgacacggacactgacacgccgacaccgctaataat 9027192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 5000720 - 5000666
Alignment:
Q  184 acggacaccggacacgacgcggatactgacacaccgacaccgctaataatccgag 238  Q
    |||||||||||||| ||| |||||||||||||  |||||||||||||||| ||||    
T  5000720 acggacaccggacatgacacggatactgacacgtcgacaccgctaataattcgag 5000666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 9658832 - 9658893
Alignment:
Q  171 atgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||| ||||| | ||||||| |||| |||||||| |||||||||||||||||    
T  9658832 atgaagcacggatacagacacag-acacgacacggacactgacacgccgacaccgctaataat 9658893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 6389693 - 6389757
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||| || ||||||||||||||| |||| ||| |||| ||||||| | |||||||    
T  6389693 ctatgaagcacggacacagacaccggacacgacacggacactcacacgccgacacggataataat 6389757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 10294050 - 10294121
Alignment:
Q  168 tctatgaagcacggatacggacac------cggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||||||||||      |||||||||| ||||||||||||  |||| ||||||||||||    
T  10294050 tctatgaagcacggatacggacacgaacaccggacacgacacggatactgacatgccgataccgctaataat 10294121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 30866253 - 30866189
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||| ||| |||||||||||||||| ||| | || || |||||||| ||||||||||||||    
T  30866253 ctatgaagtacgaatacggacaccggacatgacactgacaccgacacaccaacaccgctaataat 30866189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 7938075 - 7938130
Alignment:
Q  178 acggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||| ||||||||||||||||||  ||| |||||||| ||||||| |||||||||    
T  7938075 acggacacggacaccggacacgacatggacactgacacgccgacacagctaataat 7938130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 16766656 - 16766711
Alignment:
Q  178 acggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||| ||||||||||||||||||  ||| |||||||| ||||||| |||||||||    
T  16766656 acggacacggacaccggacacgacatggacactgacacgccgacacagctaataat 16766711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 7977924 - 7977875
Alignment:
Q  184 acggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||| |||||||||  |||||||||||| ||||||| |||||||||    
T  7977924 acggacactggacacgacatggatactgacacgccgacacagctaataat 7977875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 9107464 - 9107415
Alignment:
Q  184 acggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||| |||| ||| |||| ||||||| |||||||||    
T  9107464 acggacaccggacacgacacggacactaacacgccgacacagctaataat 9107415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 10649277 - 10649310
Alignment:
Q  168 tctatgaagcacggatacggacaccggacacgac 201  Q
    |||||||||||||||||||||||||||| |||||    
T  10649277 tctatgaagcacggatacggacaccggatacgac 10649310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 8842280 - 8842344
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||||||||||||| ||||| |||| | |||||  |||||||||||||||||    
T  8842280 ctatgaagcacggatacggacaccggatacgacacggaaattgacatgccgacaccgctaataat 8842344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 8383204 - 8383271
Alignment:
Q  166 ggtctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||| |||||||| |||||||| ||||||||| |||| | |||||| |||||||||||||||||    
T  8383204 ggtctatgtagcacggacacggacactggacacgacacggacattgacacgccgacaccgctaataat 8383271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 4466710 - 4466645
Alignment:
Q  168 tctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||| |||||||||||||||||| ||| || | |||||||| ||||||||| |||||||    
T  4466710 tctatgaagcatggatacggacaccggacatgacacgaacactgacactccgacaccggtaataat 4466645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 4991067 - 4991014
Alignment:
Q  178 acggatacggacaccggacacgacgcggatactgacacaccgacaccgctaata 231  Q
    ||||| |||||||||| ||||||| |||| |||||||| |||||||||||||||    
T  4991067 acggacacggacaccgaacacgacacggagactgacactccgacaccgctaata 4991014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 8587129 - 8587076
Alignment:
Q  170 tatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 223  Q
    |||||||||| ||||||||||||||||| ||| |||| |||||||| |||||||    
T  8587129 tatgaagcacagatacggacaccggacatgacacggacactgacacgccgacac 8587076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 55401025 - 55401089
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||| ||||||||||||||| ||||| |||| ||||| || |||||||  ||||||||    
T  55401025 ctatgaagcacagatacggacaccggatacgacacggacactgatacgccgacacaactaataat 55401089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 32429488 - 32429425
Alignment:
Q  170 tatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||| ||||||||||||||||| || || | | |||||| |||||| ||||||||||    
T  32429488 tatgaagcacgtatacggacaccggacacaacacgaacattgacactccgacaacgctaataat 32429425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 25064858 - 25064920
Alignment:
Q  168 tctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaat 230  Q
    |||||||| ||||| ||| ||||||||||||||| | || | |||||| ||||||||||||||    
T  25064858 tctatgaaacacgggtacagacaccggacacgacacagacattgacacgccgacaccgctaat 25064920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 10335380 - 10335331
Alignment:
Q  184 acggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||| |||| |||||||| |||||||  ||||||||    
T  10335380 acggacaccggacacgacacggacactgacacgccgacacaactaataat 10335331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 24205135 - 24205086
Alignment:
Q  184 acggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||| |||| |||||||| ||||||| | |||||||    
T  24205135 acggacaccggacacgacacggacactgacacgccgacacggataataat 24205086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 28917966 - 28918015
Alignment:
Q  184 acggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||| |||| |||||||| ||||||  |||||||||    
T  28917966 acggacaccggacacgacacggaaactgacacgccgacatagctaataat 28918015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 34910278 - 34910311
Alignment:
Q  168 tctatgaagcacggatacggacaccggacacgac 201  Q
    ||||||||||||||||||||||||| ||||||||    
T  34910278 tctatgaagcacggatacggacaccagacacgac 34910311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 40917716 - 40917765
Alignment:
Q  184 acggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||| ||||||||||||| ||||||| |||||||||    
T  40917716 acggacaccggacacgacacggatactgacacgccgacacagctaataat 40917765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 398858 - 398810
Alignment:
Q  185 cggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||| |||| |||||||| |||||||||||||||||    
T  398858 cggacaccggacacgacacggacactgacacgccgacaccgctaataat 398810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 5927449 - 5927385
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||| |||||||||||||||||||||||||||| |||| |||||||| |  |||| |||||||||    
T  5927449 ctattaagcacggatacggacaccggacacgacacggacactgacacgctaacactgctaataat 5927385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 39130877 - 39130830
Alignment:
Q  168 tctatgaagcacggatacggacaccggacacgacgcggatactgacac 215  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  39130877 tctatgaagcacggatacggacaccggacacgacatggatattgacac 39130830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 48040560 - 48040507
Alignment:
Q  180 ggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||||||| |||| |||||||| ||||||| | |||||||    
T  48040560 ggatacggacaccggacacgacacggacactgacacgccgacacagataataat 48040507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 9630690 - 9630634
Alignment:
Q  168 tctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacacc 224  Q
    |||||||||||||||||| |||||| ||||| || |||| |||||||| ||||||||    
T  9630690 tctatgaagcacggatacagacaccagacacaacacggacactgacacgccgacacc 9630634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 10572690 - 10572634
Alignment:
Q  177 cacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||||||||||  | | |||||||| |||||||| ||||||||    
T  10572690 cacggatacggacaccggacacgacatgaacactgacacgccgacaccactaataat 10572634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 35702691 - 35702659
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgac 201  Q
    |||||||||||||||||||||||||||||||||    
T  35702691 ctatgaagcacggatacggacaccggacacgac 35702659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 38503279 - 38503334
Alignment:
Q  178 acggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||| |||||||| ||||| ||| |||| ||| ||||||||||||||||||||||    
T  38503279 acggacacggacacgggacatgacacggacactaacacaccgacaccgctaataat 38503334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 20157441 - 20157395
Alignment:
Q  187 gacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||| |||  ||||||||| ||||||||||||||||    
T  20157441 gacaccggacacgacacgggcactgacacatcgacaccgctaataat 20157395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 2896215 - 2896166
Alignment:
Q  184 acggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||| ||||||| || |||| |||||||| |||||||||||||||||    
T  2896215 acggacaacggacacaacacggacactgacacgccgacaccgctaataat 2896166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 34298405 - 34298450
Alignment:
Q  188 acaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||| |||||||| |||| ||||||||||||||||| ||||||||    
T  34298405 acaccagacacgacacggaaactgacacaccgacaccactaataat 34298450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 34315662 - 34315722
Alignment:
Q  168 tctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaa 229  Q
    ||||||||||||||||||||| |  ||||||||| ||||||||||||  ||||||| |||||    
T  34315662 tctatgaagcacggatacggata-tggacacgacacggatactgacatgccgacacagctaa 34315722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 13350 - 13414
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||||||||||||| | ||| |||| |||||||| |||||||  ||||||||    
T  13350 ctatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataat 13414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 21977 - 21913
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||||||||||||| | ||| |||| |||||||| |||||||  ||||||||    
T  21977 ctatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataat 21913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 126457 - 126394
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||| |||| ||||||||  ||||||||||||| || ||||||||||||||    
T  126457 ctatgaagcacggatacgcacac-ggacacgatacggatactgacacgccaacaccgctaataat 126394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 25192456 - 25192392
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||| ||||||||| |||||||||  |||| |||||||| ||||||| |||||||||    
T  25192456 ctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataat 25192392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 13437075 - 13437009
Alignment:
Q  167 gtctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||| | |||||||||||| |||  ||| |||||||| ||||||| |||||||||    
T  13437075 gtctatgaagcacggacatggacaccggacatgacatggacactgacacgccgacacagctaataat 13437009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 40332155 - 40332197
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactg 211  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  40332155 ctatgaagcacggatacggacaccggacacgacacggacactg 40332197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 28642358 - 28642422
Alignment:
Q  169 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||||||| |||||||||| |||| | |||||||  ||||| | |||||||    
T  28642358 ctatgaagcacggatacggacatcggacacgacacggacaatgacacattgacacggttaataat 28642422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 22651935 - 22651990
Alignment:
Q  178 acggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||| || ||||||||||||||| |||| |||||||| ||||||| |||||||||    
T  22651935 acggacactgacaccggacacgacacggacactgacacgccgacacagctaataat 22651990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 24362302 - 24362247
Alignment:
Q  178 acggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||| ||||| | || || ||||| |||||||||||||||||    
T  24362302 acggatacggacaccggatacgacacagacaccgacacgccgacaccgctaataat 24362247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 29510396 - 29510349
Alignment:
Q  186 ggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||| |||| |||||||| ||||||| |||||||||    
T  29510396 ggacaccggacacgacacggacactgacacgccgacacagctaataat 29510349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 198
Target Start/End: Original strand, 22595949 - 22595979
Alignment:
Q  168 tctatgaagcacggatacggacaccggacac 198  Q
    |||||||||||||||||||||||||||||||    
T  22595949 tctatgaagcacggatacggacaccggacac 22595979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 8757 - 8812
Alignment:
Q  178 acggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||| |||||||||||||||||| |||| |||||||| ||||||| |||||||||    
T  8757 acggacacggacaccggacacgacacggacactgacacgccgacacagctaataat 8812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 178925 - 178864
Alignment:
Q  172 tgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||  ||||||||||||||| |||| |||||||| |||||||  ||||||||    
T  178925 tgaagcacggatattgacaccggacacgacacggacactgacacgccgacacaactaataat 178864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 241559 - 241608
Alignment:
Q  184 acggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||| |||| |||||||| ||||||| |||||||||    
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataat 241608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 23370 - 23433
Alignment:
Q  168 tctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataa 232  Q
    ||||||||||||||||||||||| |||||||||| | || |||||||| ||||||| | ||||||    
T  23370 tctatgaagcacggatacggaca-cggacacgacacagacactgacacgccgacacagataataa 23433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 23293086 - 23293031
Alignment:
Q  178 acggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||| |||||||||||||||||| |||| | |||||| ||||||| |||||||||    
T  23293086 acggacacggacaccggacacgacacggacaatgacacgccgacacagctaataat 23293031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 198
Target Start/End: Complemental strand, 7251730 - 7251701
Alignment:
Q  169 ctatgaagcacggatacggacaccggacac 198  Q
    ||||||||||||||||||||||||||||||    
T  7251730 ctatgaagcacggatacggacaccggacac 7251701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 7670632 - 7670677
Alignment:
Q  170 tatgaagcacggatacggacaccggacacgacgcggatactgacac 215  Q
    ||||||||||| ||| ||| ||||||||||||||||| ||||||||    
T  7670632 tatgaagcacgaatatggataccggacacgacgcggaaactgacac 7670677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 197
Target Start/End: Original strand, 23700420 - 23700449
Alignment:
Q  168 tctatgaagcacggatacggacaccggaca 197  Q
    ||||||||||||||||||||||||||||||    
T  23700420 tctatgaagcacggatacggacaccggaca 23700449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 71678 - 71737
Alignment:
Q  168 tctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    ||||||||||||||||||||||| ||||||||||      |||||||| ||||||| |||||||||    
T  71678 tctatgaagcacggatacggacatcggacacgac------actgacacgccgacacagctaataat 71737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 199
Target Start/End: Original strand, 14498 - 14527
Alignment:
Q  170 tatgaagcacggatacggacaccggacacg 199  Q
    ||||||||||||||||||||||||||||||    
T  14498 tatgaagcacggatacggacaccggacacg 14527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 225362 - 225313
Alignment:
Q  184 acggacaccggacacgacgcggatactgacacaccgacaccgctaataat 233  Q
    |||||||||||||||||| |||| |||||||| ||||||| | |||||||    
T  225362 acggacaccggacacgacacggacactgacacgccgacacagataataat 225313  T

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