View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3128-Insertion-4 (Length: 834)

Name: NF3128-Insertion-4
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3128-Insertion-4
NF3128-Insertion-4
[»] chr2 (8 HSPs)
chr2 (7-834)||(21433787-21434615)
chr2 (89-256)||(27153196-27153358)
chr2 (17-127)||(26990328-26990438)
chr2 (17-126)||(27029211-27029320)
chr2 (7-99)||(27074484-27074576)
chr2 (697-770)||(27152822-27152895)
chr2 (568-633)||(27152991-27153055)
chr2 (171-254)||(26990180-26990263)
[»] chr6 (2 HSPs)
chr6 (17-127)||(34692585-34692695)
chr6 (171-254)||(34692242-34692325)
[»] chr4 (1 HSPs)
chr4 (70-137)||(50172284-50172351)


Alignment Details
Target: chr2 (Bit Score: 765; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 7 - 834
Target Start/End: Complemental strand, 21434615 - 21433787
Alignment:
Q  7 atatgcaactcagcaagtgatttgcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21434615 atatgcaactcagcaagtgatttgcaattgaggtcgaattcctggcaacttgaattgaaaaagtggtatctctccatcaatatcagattatctttatgca 21434516  T
Q  107 tccgccatacctacaacatttgttagcaacattttcatacattttctataaaa-gtggcgacttctgaatcattaagtggatatatatttagcacatttg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21434515 tccgccatacctacaacatttgttagcaacattttcatacattttctataaaaagtggcgacttctgaatcattaagtggatatatatttagcacatttg 21434416  T
Q  206 aaactatgagcttggaatatagagaataaactttagaggaatggttcattaaaacaccaagtttaccaataatcaggaaaaaccctcactaataatccaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21434415 aaactatgagcttggaatatagagaataaactttagaggaatggttcattaaaacaccaagtttaccaataatcaggaaaaaccctcactaataatccaa 21434316  T
Q  306 gatggtagtcttttataagctttaataaatagatcaattatgatttttatagtcccttgggcacaaactcatgttagaccaaaagagcgattttagaatg 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21434315 gatggtagtcttttataagctttaataaatagatcaattatgatttttatagtcccttgggcacaaactcattttagaccaaaagagcgattttagaatg 21434216  T
Q  406 agatatttgaaggatgctattaatgagttgtatttataacttactagccgattttgtaggatcgtatcatttggttgtttaannnnnnnnaataaagtag 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        ||||||||||    
T  21434215 agatatttgaaggatgctattaatgagttgtatttataacttactagccgattttgtaggatcatatcatttggttgtttaattttttttaataaagtag 21434116  T
Q  506 ttttttcccaagtttatttgtgctctaaccaatgaagaatgctagtaatactcttttttccgggaacatgagtgttgaaaagaggtgcattaatatccct 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21434115 ttttttcccaagtttatttgtgctctaaccaatgaagaatgctagcaatactcttttttccgggaacatgagtgttgaaaagaggtgcattaatatccct 21434016  T
Q  606 gttccaaatcaattttactttgcaatgattatggagctgttagttcaaacttccaatgatagggcaccaaatcagttttacatttgcatttcatatgact 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21434015 gttccaaatcaattttactttgcaatgattatggagctgttagttcaaacttccaatgatagggcaccaaatcagttttacatttgcatttcatatgact 21433916  T
Q  706 atagagttctttgattcatattatacaactgtgtttaatttgtcaatttgtataggtaaaaagaagtatattttgaaattggtcatagattaactatcac 805  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  21433915 atagagttctttgattcatattatacaattgtgtttaatttgtccatttgtataggtaaaaagaagtatattttgaaattgttcatagattaactaccac 21433816  T
Q  806 tacactaaccattccaattacataattca 834  Q
    |||||||||||||||||||||||||||||    
T  21433815 tacactaaccattccaattacataattca 21433787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 89 - 256
Target Start/End: Complemental strand, 27153358 - 27153196
Alignment:
Q  89 tcagattatctttatgcatccgccatacctacaacatttgttagcaacattttcatacattttctataaaag-tggcgacttctgaatca----ttaagt 183  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||          ||||||| | | |||||||||||||    ||||||    
T  27153358 tcagattatctttgtgcttctgccatacctacaacatttgttagcaacattttca----------ataaaaggtagtgacttctgaatcattaattaagt 27153269  T
Q  184 ggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcatta 256  Q
    ||||| || ||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||    
T  27153268 ggatagatctttagcacatttgaaactatgagctgggtatttagagaataaactttagaggaatggttcatta 27153196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 26990438 - 26990328
Alignment:
Q  17 cagcaagtgatttgcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgcatccgccatac 116  Q
    |||||||||||||||| | |||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | | || |||||||    
T  26990438 cagcaagtgatttgcattggaggccgaagtcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatac 26990339  T
Q  117 ctacaacattt 127  Q
    |||||||||||    
T  26990338 ctacaacattt 26990328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 27029320 - 27029211
Alignment:
Q  17 cagcaagtgatttgcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgcatccgccatac 116  Q
    |||||||||||||||| | |||| | || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | | || |||||||    
T  27029320 cagcaagtgatttgcattggaggccaaagtcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatac 27029221  T
Q  117 ctacaacatt 126  Q
    ||||||||||    
T  27029220 ctacaacatt 27029211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 27074484 - 27074576
Alignment:
Q  7 atatgcaactcagcaagtgatttgcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatct 99  Q
    ||||||||  || ||||||||||||  | |||| | || ||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  27074484 atatgcaatgcaacaagtgatttgcgttggaggccaaagtcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatct 27074576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 697 - 770
Target Start/End: Complemental strand, 27152895 - 27152822
Alignment:
Q  697 catatgactatagagttctttgattcatattatacaactgtgtttaatttgtcaatttgtataggtaaaaagaa 770  Q
    ||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||  |||||||||||||||    
T  27152895 catatgattatagcgttctttgattcatattatacaattgtgtttagtttgttaattcatataggtaaaaagaa 27152822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 568 - 633
Target Start/End: Complemental strand, 27153055 - 27152991
Alignment:
Q  568 ggaacatgagtgttgaaaagaggtgcattaatatccctgttccaaatcaattttactttgcaatga 633  Q
    |||| |||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||    
T  27153055 ggaaaatgagtgttgaaaagaggtgcattaatatctcggttccaaatcaa-tttactttgcaatga 27152991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 26990263 - 26990180
Alignment:
Q  171 tgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcat 254  Q
    ||||||||||| |||||| || ||| ||||||||||| |||||| ||| |  |||||||||||||||||||||||||| |||||    
T  26990263 tgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctatagagaataaactttagaggaatgattcat 26990180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 34692695 - 34692585
Alignment:
Q  17 cagcaagtgatttgcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgcatccgccatac 116  Q
    |||||||||||||||| | |||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | | || |||||||    
T  34692695 cagcaagtgatttgcattggaggccgaagtcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatac 34692596  T
Q  117 ctacaacattt 127  Q
    |||||||||||    
T  34692595 ctacaacattt 34692585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 34692325 - 34692242
Alignment:
Q  171 tgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcat 254  Q
    ||||||||||| |||||| || ||| ||||||||||| |||||| ||| |  |||||||||||||||||||||||||| |||||    
T  34692325 tgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctatagagaataaactttagaggaatgattcat 34692242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 50172284 - 50172351
Alignment:
Q  70 tggtatctctccatcaatatcagattatctttatgcatccgccatacctacaacatttgttagcaaca 137  Q
    |||||||| ||||||||||||||||| | ||||||| ||  |||| |||||||||||| |||||||||    
T  50172284 tggtatctttccatcaatatcagattgtttttatgcttcatccatgcctacaacattttttagcaaca 50172351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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