View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128-Insertion-5 (Length: 839)
Name: NF3128-Insertion-5
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 738; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 12 - 836
Target Start/End: Original strand, 26914303 - 26915137
Alignment:
| Q |
12 |
gcatcaacttttccatgagccattgcaccaacctgaagaagcagacaacggtcgatcaagaaataacaaaaataatcccatctataaagtgtatataaag |
111 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
26914303 |
gcatcaacttttccatgagccattgcatcaacctgaagaagcagacaacagtcgatcaagaaataacaaaaatgatcccatctgtaaagtgtatataaag |
26914402 |
T |
|
| Q |
112 |
acttgcaaaagcttaccacaaatacaagactcttat------cacagttagcagcaacaaagtcgcttattttaactgtctttggcgagttaaacgaaag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
26914403 |
acttgcaaaagcttaccacaaatacaagactcttatgattatcacagttagcagcaacaaagtcgtttattttaactgcctttggcgagttaaacgaaag |
26914502 |
T |
|
| Q |
206 |
acctacaacagcataagagtgtcacgtcataagaaaacgcttcacagaagacattgacattctaccattgcctagttataatactcacctattttaagcg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26914503 |
acctacaacagcataagagtgtcacgtcataagaaaacgcttcacagaagacattgacattctaccattgcctagttataatactcacctattttaagcg |
26914602 |
T |
|
| Q |
306 |
agttgaccggtaagtgttgagtcacaggattttgaattaactctaaaagccttccctcattgccctttgatttgatactggatttttgcagcaactccgc |
405 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26914603 |
agttgaccggtaagtgttgagtcacaggattttgaattaactcaaaaagccttccctcattgccctttgatttgatactggatttttgcagcaactccgc |
26914702 |
T |
|
| Q |
406 |
taaaataattattaggtattttgaagtgggagaaaagcaaagatgtcaatatgatgatcaaagccaagaatgagaatggattatgggataatacatttca |
505 |
Q |
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| T |
26914703 |
taaaataattattaggtattttgaagtgggagaaaagcaaagatgtcaatatgatgatcaaagccaagaatgagaatggattatgggataatacatttca |
26914802 |
T |
|
| Q |
506 |
tgaatagagaaacttacacatcatattacaaaattttccaaaagtttttggtatcctgccttgtggatcaactttaataagaattccttcatcggttcgg |
605 |
Q |
| |
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| T |
26914803 |
tgaatagagaaacttacacatcatattacaaaactttccaaaagtttctggtatcctgccttgtggatcaactttaataagaattccttcatcggttcgg |
26914902 |
T |
|
| Q |
606 |
atgaatacagcgcttactctaccagacaagcaaagaggactacccattattgcaaggagagcctaaatttcatatacattcagagtcaggtacatcaaga |
705 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26914903 |
atgaatacagcgcttactctaccagacaagcaaagaggactatccattattgcaaggagagcctaaattccatatacattcagagtcaggtacatcaaga |
26915002 |
T |
|
| Q |
706 |
aaacgag---ataatctttcaaacttttttgggatatgttacacaacacttttctaagaaaactacaatggaacataaaacagaatataactattcaaag |
802 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26915003 |
aaacgagataataatctttcaaacttttttgggatatgttacacaacacttttctaagaaaactacaatggaacataaaacagaatataactattcgaag |
26915102 |
T |
|
| Q |
803 |
aaacggc-caagctaggttgtaattagactcttca |
836 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |
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| T |
26915103 |
aaacggcaaaagctaggttgtaattagactcttca |
26915137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 26914274 - 26914310
Alignment:
| Q |
7 |
agtcagcatcaacttttccatgagccattgcaccaac |
43 |
Q |
| |
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| T |
26914274 |
agtcagcatcaacttttccatgagccattgcatcaac |
26914310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 12 - 799
Target Start/End: Original strand, 51182064 - 51182834
Alignment:
| Q |
12 |
gcatcaacttttccatgagccattgcaccaacctgaagaagcagacaacggtcgatcaagaaataacaaaaataatcccatctataaagtgta------t |
105 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||||||| | |
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| T |
51182064 |
gcatcaatatttccatgaggcattgcaccaacctgaagaagcagacaacattcaatcaagaaataacaaaaatgatcccatctgtaaagtgtaatattat |
51182163 |
T |
|
| Q |
106 |
ataaagacttgcaaaagcttaccacaaatacaagactcttatcacagttagcagcaacaaagtcgcttattttaactgtctttggcgagttaaacgaaag |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
51182164 |
ataaagacttgcaaaagcttaccacaaatacaagattcttatcacagttagcagcaacgaagtctcttattttaactgtctttggcgagttaaatgaaag |
51182263 |
T |
|
| Q |
206 |
acctacaacagcataagagtgtcacgtcataagaaaacgcttcacagaagacattgacattctaccattgcctagttataatactcacctattttaagcg |
305 |
Q |
| |
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| T |
51182264 |
acctacaacagcataagagtttgacgtcatcataagaat-------gaagacattgacattgtaccattgccta---------ctcaccaattttaagcg |
51182347 |
T |
|
| Q |
306 |
agttgaccggtaagtgttgagtcacaggattttgaattaactctaaaagccttccctcattgccctttgatttgatactggatttttgcagcaactccgc |
405 |
Q |
| |
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||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
51182348 |
agttggcgggtaagtgttgagtcacaggattttgaattaactttaaaagctttccctcattgtcctttgatttgatactggatttttgcagcaactccac |
51182447 |
T |
|
| Q |
406 |
taaaataattattaggtattttgaagtgggagaaaagcaaagatgtcaatatgatgatcaaagccaagaatgagaatggattatgggataatacatttca |
505 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51182448 |
taaaataattattaagtattttgaagtggg-gaaaagcaaagatgtcaatatgatgatcaaagccaagaat---------------gataatacatttca |
51182531 |
T |
|
| Q |
506 |
tgaat---agagaaa-----cttacacatcatattacaaaattttccaaaagtttttggtatcctgccttgtggatcaactttaataagaattccttcat |
597 |
Q |
| |
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||| | |||||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51182532 |
tgagttgatgagaaacttagcttacccatcatattacaaaaatttccaaaagtttttggtatcctggtttgtggatcaactttaataagaattccttcac |
51182631 |
T |
|
| Q |
598 |
cggttcggatgaatacagcgcttactctaccagacaagcaaagaggactacccattattgcaaggagagcctaaatttcatatacattcagagtcaggta |
697 |
Q |
| |
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|||||| |||||||| ||||||||||||||||| ||||||||| | ||||| || |||||||||||||||||||| | |||||||||||||||| ||||| |
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| T |
51182632 |
cggttctgatgaatatagcgcttactctaccagccaagcaaagtgcactactcaatattgcaaggagagcctaaaatccatatacattcagagttaggta |
51182731 |
T |
|
| Q |
698 |
catcaagaaaacgag---ataatctttcaaacttttttgggatatgttacacaacacttttctaagaaaactacaatggaacataaaacagaatataact |
794 |
Q |
| |
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||||||||||| ||| |||||||||||||||||| ||| | | | | || ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51182732 |
catcaagaaaatgagataataatctttcaaacttttcagggttttat--aataatacttttctaagaaaactacaatggaacataaaacaaaatataact |
51182829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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