View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128-Insertion-6 (Length: 862)
Name: NF3128-Insertion-6
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128-Insertion-6 |
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| [»] scaffold2079 (2 HSPs) |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 409
Target Start/End: Complemental strand, 849 - 443
Alignment:
| Q |
8 |
attcaatctagaaagggttgaataaataaaatattagaagaaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
849 |
attcaatctagaaagggttgaataaataaaatattagaagaaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaa |
750 |
T |
|
| Q |
108 |
tctgatgaagttgaagttgcatttggaattgtagctcctaattctgccattgttcttcagactaaacttttg---atgagtacaacacatgcttcaatat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| ||||||||| |
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| T |
749 |
tctgatgaagttgaagttgcatttggaattgtagctcctaattctgccattgttcttcaaactcaacttttgatgatgagtacaacacattcttcaatat |
650 |
T |
|
| Q |
205 |
tgcttt--tagagttgaggtttggaaaaagagctatgaagaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgt |
302 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
649 |
tgcttttatagagtcgaggtttggaaaaagagctatgaagaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgt |
550 |
T |
|
| Q |
303 |
ttaatacgaattcgttttacactatactcgattgaactttcttgtccaacgaacnnnnnnnnttgaacctgtcccaccaaatagattccatttattcctt |
402 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
549 |
ttaatacgaattcgttttatactatactcgattgaactttcttgtccaacgagcaaaaacaattgaacctgtcccaccaaatagattccatttattcctt |
450 |
T |
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| Q |
403 |
cattttt |
409 |
Q |
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||||||| |
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| T |
449 |
cattttt |
443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 719 - 862
Target Start/End: Complemental strand, 396 - 253
Alignment:
| Q |
719 |
ccaacttgtgcatttgaggatagtcccataatttgcaatttatgttggtcacctatgggcggattccgggtacgcaatatgagaaaaattctacccgatt |
818 |
Q |
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|||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
396 |
ccaacttgtgcatttgagcatagtcgcataatttgcaattcatgttggtcacctatgggcggattcggggtacgcaatatgagaaaaattctacccgatt |
297 |
T |
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| Q |
819 |
aagtatagtaggttatcttaatattacaaaaaagtagtgtctgc |
862 |
Q |
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|||||||||||| |||||||||||| ||||||||||||| |||| |
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| T |
296 |
aagtatagtaggctatcttaatattgcaaaaaagtagtgcctgc |
253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 4e-71; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 79 - 313
Target Start/End: Original strand, 6333713 - 6333961
Alignment:
| Q |
79 |
tgaaaattgaagttatttaccttgttgaatctgatgaagttgaagttgcatttggaatt------gtagctcctaattctgccattgttcttcagactaa |
172 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
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| T |
6333713 |
tgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgcatttggaattgtaattgtagctcctaattcagccattgttcttcaaactaa |
6333812 |
T |
|
| Q |
173 |
acttttgatgagtacaacacatgcttcaatattgctttt--------agagttgaggtttggaaaaagagctatgaagaaaaaacatggaaaaggagcta |
264 |
Q |
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| T |
6333813 |
acttttgatgagtacaacacattcttcaatattgcttttcttatataatagttgagttttggaaaaagagatatgaagaaaaaacagggaaaaagaggta |
6333912 |
T |
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| Q |
265 |
tgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaat |
313 |
Q |
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||| |||||||| |||||| |||||||||| ||||||||||||||||| |
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| T |
6333913 |
tgacacaatttggatgagaaagtgacccatttaaacgtttaatacgaat |
6333961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 62 - 227
Target Start/End: Complemental strand, 6242582 - 6242409
Alignment:
| Q |
62 |
aatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctgatgaagttgaagtt------gcatttggaattgtagctcctaattctgcc |
155 |
Q |
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| T |
6242582 |
aatgtttgagtagtgattgaaaattgaagttatttaccttattgaatccgatgaagttcaagttcaagttgcatttggaattgtagctcctaattctgcc |
6242483 |
T |
|
| Q |
156 |
attgttcttcagactaaacttttgatgagtacaacacatgcttcaatattgcttt--tagagttgaggtttgga |
227 |
Q |
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| T |
6242482 |
gttgttcttcaaacttaacttttgataagtacaacacattcttcaatattgcttttatagagttgaggtttgga |
6242409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 47 - 211
Target Start/End: Original strand, 6326201 - 6326368
Alignment:
| Q |
47 |
gaaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctga------tgaagttgaagttgcatttggaattgta |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |
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| T |
6326201 |
gaaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgaagttgcatttgcaattgta |
6326300 |
T |
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| Q |
141 |
gctcctaattctgccattgttcttcagactaaacttttgatgagtacaacacatgcttcaatattgctttt |
211 |
Q |
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||| ||||||| |||||||||| | | ||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
6326301 |
gcttctaattcagccattgttcgttaaact---cttttgatgagtacaacacattcttcaatattgctttt |
6326368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 258 - 409
Target Start/End: Complemental strand, 6242411 - 6242256
Alignment:
| Q |
258 |
ggagctatgaaacaatttgcatgagacagtgaccca-taaaaacgtttaatacgaattcgttttacactata---ctcgattgaactttcttgtccaacg |
353 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |
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| T |
6242411 |
ggagctatgaaacaatttggatgagacagtgacccattaaaaacgtttaatacgaattcgttttatactatagttctcgattgaaatttcttgtccaacg |
6242312 |
T |
|
| Q |
354 |
aacnnnnnnnnttgaacctgtcccaccaaatagattccatttattccttcattttt |
409 |
Q |
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| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6242311 |
agcaaagaaaattgaacctgtcccaccaaatagattccatttattccttcattttt |
6242256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 720 - 857
Target Start/End: Complemental strand, 6242208 - 6242078
Alignment:
| Q |
720 |
caacttgtgcatttgaggatagtcccataatttgcaatttatgttggtcacctatgggcggattccgggtacgcaatatgagaaaaattctacccgatta |
819 |
Q |
| |
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|||||||| |||||||| |||||| |||||||||||||| |||||| |||| ||||| ||||||| ||||||||||||||||| ||||| ||| |
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| T |
6242208 |
caacttgttcatttgagcatagtcacataatttgcaattcatgttgatcacgtatggacggattcgcggtacgcaatatgagaa-------acccggtta |
6242116 |
T |
|
| Q |
820 |
agtatagtaggttatcttaatattacaaaaaagtagtg |
857 |
Q |
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|||||||||| || ||||||||| ||||||||||||| |
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| T |
6242115 |
agtatagtagactaacttaatattgcaaaaaagtagtg |
6242078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 6220993 - 6220934
Alignment:
| Q |
147 |
aattctgccattgttcttcagactaaacttttgatgagtacaacacatgcttcaatattg |
206 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
6220993 |
aattctgccattgttcttcaaactcaacttttgatgagtacaacacatgcttcaatattg |
6220934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 413 - 490
Target Start/End: Original strand, 36807230 - 36807309
Alignment:
| Q |
413 |
aggagatagagcgtgagac--aggtttgcaaaactgaatatcctttattaaagcaaaatggctaatatatagcctttaca |
490 |
Q |
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|||||||||| ||||| || |||||||| |||||| ||| ||||||||||||||| ||||||||||||| | |||||| |
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| T |
36807230 |
aggagatagatcgtgacactcaggtttgcgaaactgggtattctttattaaagcaaagtggctaatatataacatttaca |
36807309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 161 - 121
Alignment:
| Q |
285 |
agtgacccataaaaacgtttaatacgaattcgttttacacta |
326 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| |||| |
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| T |
161 |
agtgacccataaaa-cgtttaatacgaattcgttttatacta |
121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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