View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128-Insertion-7 (Length: 794)
Name: NF3128-Insertion-7
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128-Insertion-7 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 290 - 794
Target Start/End: Complemental strand, 39732809 - 39732304
Alignment:
| Q |
290 |
gtcaactgaaatagaaagataaacatcatgaatagattcgggggataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttc |
389 |
Q |
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| T |
39732809 |
gtcaactgaaatagaaagataaacatcatgaatagattcgggggataccatttatagcccccaacatcaaatacatctgaacagagctttatctcgttcc |
39732710 |
T |
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| Q |
390 |
tccaagaaaatctttcaattctccatgtgaatttaaatggagaaggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctac |
489 |
Q |
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| T |
39732709 |
tccaagaaaatctttcaattctccatgtgaatttaaatggagaaggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctac |
39732610 |
T |
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| Q |
490 |
taatgttgataaaaataaatgaaaagagcaattaagtaagtatcaaggcttgaattatctgaaaacttggagaggtaaaacaaataagagtagtcccgca |
589 |
Q |
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| T |
39732609 |
taatgttcataaaaataaatgaaaagagcaattaagtaagtatcaagacttgaattatctgaaaacttggagaggtaaaacaaataagagtagtcccgca |
39732510 |
T |
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| Q |
590 |
gatgcctagtccagcaatgtggaatggctaaagaagtacatgaacatgattggtgtatatgtcttgagtttgtgaatatgattttgaagttcatgaacca |
689 |
Q |
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| T |
39732509 |
gatgtttagtccagcaatgtagaatggctaaagaagtacatgaacatgattggtgtatatgtcatgagtttgtgaatatgattttgaagttcatgaacca |
39732410 |
T |
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| Q |
690 |
tataccaaaataagcccacataaccgtatcgtaaatcattcatccgtgtttaccagattgacttatggacctttaagttacatattacctatg-agcatg |
788 |
Q |
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| T |
39732409 |
tataccaaaataagcccacataaccgtatcgtaaatcattcatccgtgtttaccagattgacttatggacctttaagttacatattacctatgaagcatg |
39732310 |
T |
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| Q |
789 |
gactcc |
794 |
Q |
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|||||| |
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| T |
39732309 |
gactcc |
39732304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 294
Target Start/End: Complemental strand, 39733127 - 39732840
Alignment:
| Q |
7 |
atagggtaccttttgtcacagagtcctcagcattgatttgattaactaatgacatgctacactgtgcataaatactccaaccgttgggcaaattttctga |
106 |
Q |
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| T |
39733127 |
atagggtaccttttgtcacagagtcctcagcattgatttgattaactaaagacatggtaaactgtgcataaatactccaaccgttgggcaaattttctga |
39733028 |
T |
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| Q |
107 |
atctgcaacgccaaaatacatggacaaatggtccatcgcattgtccccttctgggaaaataattacatgcctgatcagataaaagaaaaaacattagaag |
206 |
Q |
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| T |
39733027 |
atctgcaacgccaaaatacatggacaaatggtccatcgcattgtccccttctgggaaaataattacatgcctgatcagataaaagaaaaaacattagaag |
39732928 |
T |
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| Q |
207 |
ggatcacagatgataaatacacacaggaactaatgtaacaactacaacaaaatcacttcctccaatagatagaatctacatgggtcaa |
294 |
Q |
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| T |
39732927 |
ggatcacagatgataaatacacacaggaactaatgtaacaactacaacaaaatcagttcctccaatagatagaatctacatggctcaa |
39732840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 39867846 - 39868122
Alignment:
| Q |
7 |
atagggtaccttttgtcacagagtcctcagcattgatttgattaactaatgacatgctacactgtgcataaatactccaaccgttgggcaaattttctga |
106 |
Q |
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| T |
39867846 |
atagggtacctcttctcacagagtacttattattgatttgattaactactgtcaagctaaactgtgcataactactccaaccattgggcaaattagctga |
39867945 |
T |
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| Q |
107 |
atctgcaacgccaaaatacatggacaaatggtccatcgcattgtccccttctgggaaaataattacatgcctgatcag----ataaaagaaaaaacatta |
202 |
Q |
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| T |
39867946 |
atcttgaacatccaaatacatggacaaatggtccgacacattgttcccttttgggaaaagaagtacacgcctgctccgagtaagaaaaaaaaaagaatta |
39868045 |
T |
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| Q |
203 |
gaagggatcacagatgataaatacacacaggaactaatgtaacaactacaacaaaatcacttcctccaatagataga |
279 |
Q |
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| T |
39868046 |
gaagtgaacacttaagataaatacacataggaactaatataacagctacaacaaaatgacttccgccactagataga |
39868122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 334 - 525
Target Start/End: Original strand, 37476844 - 37477029
Alignment:
| Q |
334 |
ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaatttaaatggagaa |
433 |
Q |
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| T |
37476844 |
ataccatttgtaactcccaacaacaaatacatctgaatagagctttttcaaattcaccctagaaaagttgtcaattctccatgtgaatcttgatggtgaa |
37476943 |
T |
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| Q |
434 |
ggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctactaatgttgataaaaataaatgaaaagagcaattaag |
525 |
Q |
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| T |
37476944 |
ggatcctcgacaggct------ccacagtgttggcagtttcaggttgagcaaccactaatgttcatgaatataaatgaaaagagcaattaag |
37477029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 39901566 - 39901618
Alignment:
| Q |
227 |
acacaggaactaatgtaacaactacaacaaaatcacttcctccaatagataga |
279 |
Q |
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| T |
39901566 |
acacaggaactaaaataacaactacaacaaaatcacttcctacaatagataga |
39901618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 334 - 421
Target Start/End: Original strand, 39868226 - 39868313
Alignment:
| Q |
334 |
ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaat |
421 |
Q |
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| T |
39868226 |
ataccatttgtaacccccaacttcaaatacatctgaatagagctttattgtatttatcgaagaaaatcccccaattctccatgtgaat |
39868313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 334 - 421
Target Start/End: Original strand, 39901700 - 39901787
Alignment:
| Q |
334 |
ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaat |
421 |
Q |
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| T |
39901700 |
ataccatttatagccaccaacttcaaatacatctgaatagatctctctcgcatttttctgagaaaatctgtcaattgtccatttgaat |
39901787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 185
Target Start/End: Original strand, 37476603 - 37476723
Alignment:
| Q |
62 |
gctacactgtgcataaatactccaaccgttgggcaaattttctgaatctgcaacgccaaaatacatggacaaatggtccatcgcattgtccccttctggg |
161 |
Q |
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|||| |||||||||| |||||||||||| ||||| | | |||||||||||| | |||||||||||||||| ||||| | |||| ||||| ||| |
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| T |
37476603 |
gctaaactgtgcatatctactccaaccgtagggcagactagttgaatctgcaacatccaaatacatggacaaatagtcca---cgttgttcccttttgga |
37476699 |
T |
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| Q |
162 |
aaaataattacatgcctgatcaga |
185 |
Q |
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| T |
37476700 |
aaaataagtacacgcctgttcaga |
37476723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 39913661 - 39913702
Alignment:
| Q |
334 |
ataccatttatagcccccaacatcaaatacatctgaacagag |
375 |
Q |
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| T |
39913661 |
ataccatttatagcccccagcttcaaatacatctgaatagag |
39913702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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