View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128-Insertion-8 (Length: 759)
Name: NF3128-Insertion-8
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128-Insertion-8 |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold1572 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 545; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 117 - 759
Target Start/End: Original strand, 21318451 - 21319099
Alignment:
| Q |
117 |
ttagagagttactattatgctcat--ggatattcaacttctgtgcattctcaaggctttattccaaaggtcttgctctgttaaggttttgctcattttga |
214 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||||||| |
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| T |
21318451 |
ttagagagttactattatgcccatatggatattcaacttctgtgcattctcaaggctttattccataggtcttgttctgttaaggtttggttcattttga |
21318550 |
T |
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| Q |
215 |
tttctttttgtaattatatgttttgaatcataacctattatgctcttgtaacgatgttttgatccactatgtgtttgttcagaattaacaaagtgaatca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||||| | ||| |||||| |
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| T |
21318551 |
tttctttttgtaattatatgttttgaatcataacctattatgctcttgtaatgatgttctgatcaatcatgtgtttgttcagaattcaggaagcgaatca |
21318650 |
T |
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| Q |
315 |
atctacttgcttttgttagataaatcttgaatgtttttgattcagctatgaaatagggaaactctttcatcaatcttatatctaaattgagagtaggtgg |
414 |
Q |
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| T |
21318651 |
atctacttgcttttgtaagataaatcttgaatgtttttgattcagctatgaaatagggaaactctgtcatcaatcttatatctaaattgagagtaggtgg |
21318750 |
T |
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| Q |
415 |
gtgttatagggagcttaaatgatgaggaaaaggtcttgagaagagttaaagagagattagaaatggtggaatttaatgatttagagaaagacagatgggt |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21318751 |
gtgttatagggagcttaaatgatgaggaaaaggtcttgagaagagttaaggagagattagaaatggtggaatttaatgatttagagaaagacaaatgggt |
21318850 |
T |
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| Q |
515 |
ttggacaggtggagtattaacaagtatctatcccgccagggaagcttacaaggctttaatgttgggagtgc----cacatgtaatccgtcttggtcaaga |
610 |
Q |
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| T |
21318851 |
ttggacaggtggagtattaacaagtatctatcccgccagggaagcttacaaggctttaatgttgggagtgccaaacacatgtaatccgtcttggtcaaga |
21318950 |
T |
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| Q |
611 |
gcttggaataaatcgatcccgtcaaagatatctatgttggtatggagaatgctttaaattaggatagctacaaaagacaatttgtataggagaggagtga |
710 |
Q |
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| T |
21318951 |
gcttggaataaatcgatcccgtcaaagatatctatgttggtatggagaatgctttaaattaggatagctacaaaagacaatttgtataggagaggagtga |
21319050 |
T |
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| Q |
711 |
ttagtgaagggatgcttagctgtgttggagattgtggaggagaagaaac |
759 |
Q |
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| T |
21319051 |
ttagtgaagggatgcttagctgtgttggaaattgtggaggagaagaaac |
21319099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 319 - 392
Target Start/End: Original strand, 3854688 - 3854761
Alignment:
| Q |
319 |
acttgcttttgttagataaatcttgaatgtttttgattcagctatgaaatagggaaactctttcatcaatctta |
392 |
Q |
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| T |
3854688 |
acttgcttttgtaagataaaacttgaatgttttggattcaactgtgaaatagggaaattttgtcatcagtctta |
3854761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 3854431 - 3854528
Alignment:
| Q |
55 |
tctattcaagagtttatcattctcaaagcttttaaagttactaacttctgtgtatttgatgcttagagagttactattatgctcatggatattcaactt |
153 |
Q |
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| T |
3854431 |
tctattcgagagtttgtcattatcaaggcttttaaagttcttaacttctgcggcattgacgctaagagagttactattatgc-aaaggatattcaactt |
3854528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 3915061 - 3915012
Alignment:
| Q |
314 |
aatctacttgcttttgttagataaatcttgaatgtttttgattcagctat |
363 |
Q |
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| T |
3915061 |
aatctacttgcttttgtgagataaaactttaatgtttttgattcatctat |
3915012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: scaffold1572
Description:
Target: scaffold1572; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 171 - 519
Target Start/End: Complemental strand, 1632 - 1264
Alignment:
| Q |
171 |
tttattccaaaggtcttgctctgttaaggttttgctcattttgatttctttttgtaattatatgttttgaatcataacctattatgctcttgtaacgatg |
270 |
Q |
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| T |
1632 |
tttattccataggtcttgttctgttaaggtttggttcattttgatttctttttgtaattatatgttttgaatcataacctattatgctcttgtaacgatg |
1533 |
T |
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| Q |
271 |
ttttgatccactatgtgtttgttcagaattaacaaagtgaatcaatctacttgcttttgttagataaatcttgaatgtttttgattcagctatgaaatag |
370 |
Q |
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| T |
1532 |
ttctgatccactatgtgtttgttcagaattaacaaagtgaatcaatctacttgcttttgttagataaatcttgaatgtttttgattcagctatgaaatag |
1433 |
T |
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| Q |
371 |
ggaaactctttcatcaatcttatatctaaattgagagtaggtgggtgtt--------atagggagcttaaatgatg----aggaaaagg-------tctt |
451 |
Q |
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| T |
1432 |
ggaaacttggtcatcaatcttatgtctaaattgcgagtaggtgggtgttaagtttgaacagggagcttaaatgatgaagaaggaaaaggtctcgactctt |
1333 |
T |
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| Q |
452 |
gagaagagttaaagagaga-ttagaaatggtggaatttaatgatttagagaaagacagatgggtttgga |
519 |
Q |
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| T |
1332 |
gagaagagttaaagagagatttagaaatggtggaatttaatgatttagaggaatgcaaatgggtttgga |
1264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 613 - 759
Target Start/End: Complemental strand, 1268 - 1122
Alignment:
| Q |
613 |
ttggaataaatcgatcccgtcaaagatatctatgttggtatggagaatgctttaaattaggatagctacaaaagacaatttgtataggagaggagtgatt |
712 |
Q |
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| T |
1268 |
ttggaataaatcgatcccgtcaaagatatctatgttggtatggagaatgcttcaaattaggatagctacaaaagatgatttgtatattagaggagtgatt |
1169 |
T |
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| Q |
713 |
agtgaagggatgcttagctgtgttggagattgtggaggagaagaaac |
759 |
Q |
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||| ||| |||||||| ||||||||||||||||||||||||| |||| |
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| T |
1168 |
agtcaagagatgcttaactgtgttggagattgtggaggagaaaaaac |
1122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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